RNA id: TU438781


Basic Information

Item Value
RNA id TU438781
length 418
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G370418
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 3986205 ~ 3986622 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcactgtgtgttctgacacctttctatcatagtgagtattaattttttcagcaatttgtgctacagtagttcttctgtgggatcggaccagatgggctagccttagCTCCTCATGTGCATCTTGGGCACCCGtgaccctgttgccagttcaccggttgtccttccttggaccacttttggtaggtactaaccactgcatactgggaacatgccacaagacctgctgttttggaaatgctctgacccagtcatctagacatcacaatttggcccttgtcaaagtcactcagatccttacgcttgcccatcttttctgcttccaacacattaacTTTGAGAACTTActcttcacttgctgcctaatatatcccaccccatgacaggtgccattgtaatgagatactCAATGTTATTAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU438779 lncRNA downstream 2626 3983111 ~ 3983579 (-) True G370416
TU438778 lncRNA downstream 3265 3981710 ~ 3982940 (-) True G370415
TU438732 lncRNA downstream 208862 3777129 ~ 3777343 (-) True G370372
TU438674 lncRNA downstream 381620 3604354 ~ 3604585 (-) True G370327
TU438655 lncRNA downstream 520344 3465647 ~ 3465861 (-) True G370308
TU438789 lncRNA upstream 155300 4141922 ~ 4142128 (-) True G370425
TU438835 lncRNA upstream 459836 4446458 ~ 4447106 (-) True G370468
TU439062 lncRNA upstream 818258 4804880 ~ 4811748 (-) True G370665
TU439059 lncRNA upstream 909605 4896227 ~ 4914035 (-) True G370663
TU439109 lncRNA upstream 1059418 5046040 ~ 5046246 (-) True G370699
XM_034299954.1 mRNA downstream 368085 3611719 ~ 3618120 (-) True LOC113535432
XM_026928713.2 mRNA downstream 369313 3611719 ~ 3616892 (-) False LOC113535432
XM_026928711.2 mRNA downstream 815720 3083070 ~ 3170485 (-) True gpc5a
XM_034300420.1 mRNA downstream 1094120 2874908 ~ 2892085 (-) True LOC117596192
XM_026928791.2 mRNA downstream 1147416 2833613 ~ 2838789 (-) True LOC113535482
XM_034300309.1 mRNA upstream 501527 4488149 ~ 4504739 (-) True LOC113535753
XM_026928684.2 mRNA upstream 524648 4511270 ~ 4517988 (-) True cnpy3
XM_026929209.2 mRNA upstream 609808 4596430 ~ 4618808 (-) False cfap221
XM_026929207.2 mRNA upstream 609808 4596430 ~ 4618808 (-) False cfap221
XM_026929211.2 mRNA upstream 609808 4596430 ~ 4618297 (-) False cfap221
TU438365 other downstream 1132994 2843212 ~ 2853211 (-) True LOC117596167
XR_003403632.2 other downstream 1411734 2566757 ~ 2574471 (-) False LOC113535702
TU437816 other downstream 2190981 1792187 ~ 1795224 (-) True G369586
XR_004577318.1 other downstream 2386461 1541362 ~ 1599744 (-) False nrp2a
TU437448 other downstream 2709392 1276021 ~ 1276813 (-) True G369242
XR_003403643.2 other upstream 470813 4457435 ~ 4457541 (-) True LOC113535829
XR_004577365.1 other upstream 472695 4459317 ~ 4459423 (-) True LOC117596196
XR_004577366.1 other upstream 474587 4461209 ~ 4461315 (-) True LOC117596197
XR_004577367.1 other upstream 476486 4463108 ~ 4463214 (-) True LOC117596198
XR_004577360.1 other upstream 537880 4524502 ~ 4524784 (-) True LOC117596183

Expression Profile