RNA id: TU438835


Basic Information

Item Value
RNA id TU438835
length 649
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G370468
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 4446458 ~ 4447106 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaagaaaccttgagaggaaccaggctcaacagagaacccatcctcatatgggtttacactgtagtgtgcgtgtgtgtgagcacaatgtgtgttggtgtagtccatggaaaacagctgaagcgttttcgtggcagtatgaagcattgccggtggacaggtccagagtgaaggggggggaggtctggatgaccggcagctcaggagtgatgctcatctggtccagagcgtaggggggtctggatcaccggcagctcaggagtgtagctcggcagaaggagaaggaaagtggttaggtacactcacagtcaccgtgtggagataaaactcaacatccacgagtcccccagatctactcctttgataaaaacactagtcgctaaatgctaggttaaataaataagtcttcaacctcgacttaaacactgagaccgtgtctgcttcacgtacattaactgggagactattccataattttggggcttggtaagagaaagctctgccccctgccatGGTTTTGGCAacgcgtggtactgatagacagcctgcatccttagagcgaagtaggcgtggcggaacgtaaggtactaacatatcgcttaaatactgcggagcgagaccgtttaatgctttataggttaggagtaatatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU438789 lncRNA downstream 304330 4141922 ~ 4142128 (-) True G370425
TU438781 lncRNA downstream 459836 3986205 ~ 3986622 (-) True G370418
TU438779 lncRNA downstream 462879 3983111 ~ 3983579 (-) True G370416
TU438778 lncRNA downstream 463518 3981710 ~ 3982940 (-) True G370415
TU438732 lncRNA downstream 669115 3777129 ~ 3777343 (-) True G370372
TU439062 lncRNA upstream 357774 4804880 ~ 4811748 (-) True G370665
TU439059 lncRNA upstream 449121 4896227 ~ 4914035 (-) True G370663
TU439109 lncRNA upstream 598934 5046040 ~ 5046246 (-) True G370699
TU439112 lncRNA upstream 611747 5058853 ~ 5059054 (-) True G370702
TU439117 lncRNA upstream 615038 5062144 ~ 5062436 (-) True G370705
XM_034299954.1 mRNA downstream 828338 3611719 ~ 3618120 (-) True LOC113535432
XM_026928713.2 mRNA downstream 829566 3611719 ~ 3616892 (-) False LOC113535432
XM_026928711.2 mRNA downstream 1275973 3083070 ~ 3170485 (-) True gpc5a
XM_034300420.1 mRNA downstream 1554373 2874908 ~ 2892085 (-) True LOC117596192
XM_026928791.2 mRNA downstream 1607669 2833613 ~ 2838789 (-) True LOC113535482
XM_034300309.1 mRNA upstream 41043 4488149 ~ 4504739 (-) True LOC113535753
XM_026928684.2 mRNA upstream 64164 4511270 ~ 4517988 (-) True cnpy3
XM_026929209.2 mRNA upstream 149324 4596430 ~ 4618808 (-) False cfap221
XM_026929207.2 mRNA upstream 149324 4596430 ~ 4618808 (-) False cfap221
XM_026929211.2 mRNA upstream 149324 4596430 ~ 4618297 (-) False cfap221
TU438365 other downstream 1593247 2843212 ~ 2853211 (-) True LOC117596167
XR_003403632.2 other downstream 1871987 2566757 ~ 2574471 (-) False LOC113535702
TU437816 other downstream 2651234 1792187 ~ 1795224 (-) True G369586
XR_004577318.1 other downstream 2846714 1541362 ~ 1599744 (-) False nrp2a
TU437448 other downstream 3169645 1276021 ~ 1276813 (-) True G369242
XR_003403643.2 other upstream 10329 4457435 ~ 4457541 (-) True LOC113535829
XR_004577365.1 other upstream 12211 4459317 ~ 4459423 (-) True LOC117596196
XR_004577366.1 other upstream 14103 4461209 ~ 4461315 (-) True LOC117596197
XR_004577367.1 other upstream 16002 4463108 ~ 4463214 (-) True LOC117596198
XR_004577360.1 other upstream 77396 4524502 ~ 4524784 (-) True LOC117596183

Expression Profile