RNA id: TU439062


Basic Information

Item Value
RNA id TU439062
length 3457
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G370665
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 4804880 ~ 4811748 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAATATAACATGCAGTTATTCTCATATAATAGCATGGTCTGGACTATGTTATTCCGATTAGAAGCagaagcagcctttatttgtcacatatacattacagcacattgAAATTCTTtccttcgcatatcccagcttgttaggaaatTGGGGTctgagcgcagggtcagccatgatacagaaCCCCCgaagcagagagggttaaggccttcctcaagggcccaacaatggcagcttggcagttctggggcttgaacccccgactgtctgatcagtaacccagagccttaaccactgagccaccactgccatACCGAtgaatacaatatttaatttattaaagagcgACATCAtgtattttaatggtttaaagttagatttaatgctgtggaacatctgaggaataagttagttcctgttctcaattacctatagctgcaataaacagtcattcccttaccagtctctctcgctctctctcaaaAATTGCAGcctgtctcctaacaaaaacatcacatcaacgattatacattttactttgttaaacaagactttttatccgtttattagTCGTACATTATGTGGTGCGTCCATCGTACATGTCCCTGTGCATGAGCTGTttctgtagaaacaataacgtattacgACGAGTGCTTCAATATTGACTtgtcgttcatgttacagccagaacaactgtccaagccatgctgttatacgaaaTTAATGCACATCTCCTGACCAATGAGATTTGAGCAGTGGACCATATGCTGTTAAATGCACAGTTATAAGCTGTTTTTAACATATCTGCTGAAAATTGCCAATCTAGTATTTTCAAATgcatataacaataaaaactcaattaaagggaaaaaaatccaccctaaacgacttgcatattaatcttgtGCTCTTTGCTGCTACATACGATTTATTCTGTAAAGAAATtgagttgacttttttgtttaaacctcttttacagacattttggtctattttcacttagTTAATTGGTCCTACTTTGCCCACACTGGCATTCAACTAaatgctgatagtggtgccagagTGAATTAGCCTTTGTTTCATCTCTATTTTAGAGACGGATGCACCGTCAACACCACCGTGTTCATTATCTTGTAGATCGTTAACCAGCTGATCCGAAACCCTGCCCCAACTCAGTGTAACTGCATcatatagctgcactgcattctggaactttgagtttCAAccatttgctgtctccactatgTTGGTTCCTCACCAATATGCCGGCGGAAAATGGTGACTGAGAAAAGAAGTTCTTGCTCTTCAGTTTTTAGGAAATCTGAgcgttatcccttatgtttgtgattgccaaaaaaaatgttttctaatatTAAACGCCATTGTAACTACACTAGCAACGCCCCCCTGTGGCATCAATGCAGGAGACAACCACTagcttctcacaggaataacgaaAACATAGCACCAACCAAGAAATTAGCACtacaatcactaatcactaagcacataacaaatatttaaatataaacatatttaatgtgtttcagggtggagttgtCCTTTAAAGCAAGTTTAATATTAAAGGAAATGTCCATGGTCACCTAGTCACTGGCACTGTGTAGGACAGCTGAGACTTGTATATTTGGCCTTGTACCAAACAAATATCAACCAACCGACCCTAACATACCTTTCGAAAAGGCGGAAGGTGCTGTCAGTGTATGTGGCCTTAGACAAAGATATTGTAACTGTACGTCACTGATGGCGATGATAATTTCCACCTACGACAATTCTCTGCCGTCTACAATATCTATACAACTTGAGGTCTGAATACAGCACACCCATATTAATTCAGCTACTGGATACCTGATTATTACAAAACTTTGCAAACAGCCACAACAAATGCCGCTGTTGTGAGCTACGTTTGCTTTAAAGTGCCGTTAGAATATGGAGCCAGACAAAGGCCCTCTTCAACAAAATCATGGCTTTAAATATgagacataaaatacatttgaatataTCACACCACTAACCAAAGAGCCAAGTGATTCTTGTGTCTAAATCATTTGAAATCTGCAAGAGGCATTGCGTCAATTTGATTAAGGACGGCCGTAGAAGAACGAccgagagaaaacagaaaagaccGAAGCACATGAATGTTATGAAGGCATGAAAATATGTATCTGCATTTGCTGtagaagagaggagaggcacCTGCTGGACTGTAAAAATCGACGGAAATTCTCGGACTACAACTGTACCCGCTAGCGTAGCTAACATGATTTTAAAACTCCTTCAGCGTCCTTCGCAGGATATTAATCGAAATTTCACGACGGCACTGATGGTTCGCACTTACTTCCTCAACTGTTCCCTCATCCTTTTCGATGTACAGTTTATCCAAACGATATCTTGGAAACTGAGAACTCGATGTTCTTGTGAGTGGCGGCCTCGATATTCCCTCTCCTTGGAGGAAAACGCATTAGATTTTCCTGCAAATCTTCTCACGAGGTTCCGATGCTCAGAAAAGGCGGAGCTATTCCATTCACTCCCTTCCCCCAAACGCCTTCACTGAGGAATCCTGCGAAAGACCTCGCGAAGAAGAACAGTATTTTACTGCCTTGTCGAGTGGAGCTAGCAGTCTAGCAAAAACAATATGGACATTACAGCTTAAAAATTAGAGGCCAAGCATTAATGTATGGATTAAATTAGCGCTGTGTTAGCGTTCAAGGGGTTCAATTTACCGCACTGAAAACAAACTAATTTGCACTAATTCGTCGAGTTGTATGACATGCTTGCCAATCCTGAAATTAGTCTCACAAAAAAGAACGAGATACTCAAAATCAAAATTAATGGAAATGCGGTTATTTATATGGTATAATACAAAACGACCAGAGCACAATTGTTTAGTCTCTGATCAGGATTCCTTCTGTCATGCAAATGTATTTTGCTATCATATAAAAATACGTGTGCAGAGTCTAAATTTATATTGCTCATGCTCATGAATTTGCTTTTACGTGCACACTCAAAATTACACTGTCACATTTGCTTGCTTGAAAAATCGACATCCATCTTGGAGGCATCTTGCTCACAAACCAAGTCACGctccagtttcttttttttcctttcagaattTCAGCTCATGTTTTGATCAATTTAATACCAAGCTATAATTTGACAGCCTAATTAACATCCAAGATGGCTTCTATAAACTACAGCACAAGGAAATGTTGttttttcttaggtaaaggagcagatctggaggctTCACAGGCACAgagtgaactgggatgtttggatgctgtcgccccccactTTCACGCATTAACTCAGGTTTGTtcatggtggagtggctggccattttatgtcccagggtgccctcatgtcttcTGGCTTCTGGCTTTCCCTTTcattatgctgtcacagctagtcttgccggagtccctgcctGCACTCTTCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU438835 lncRNA downstream 357774 4446458 ~ 4447106 (-) True G370468
TU438789 lncRNA downstream 662752 4141922 ~ 4142128 (-) True G370425
TU438781 lncRNA downstream 818258 3986205 ~ 3986622 (-) True G370418
TU438779 lncRNA downstream 821301 3983111 ~ 3983579 (-) True G370416
TU438778 lncRNA downstream 821940 3981710 ~ 3982940 (-) True G370415
TU439059 lncRNA upstream 84479 4896227 ~ 4914035 (-) True G370663
TU439109 lncRNA upstream 234292 5046040 ~ 5046246 (-) True G370699
TU439112 lncRNA upstream 247105 5058853 ~ 5059054 (-) True G370702
TU439117 lncRNA upstream 250396 5062144 ~ 5062436 (-) True G370705
TU439118 lncRNA upstream 250806 5062554 ~ 5062764 (-) True G370706
XM_026929095.2 mRNA downstream 177639 4619201 ~ 4627241 (-) True knstrn
XM_026929209.2 mRNA downstream 186072 4596430 ~ 4618808 (-) False cfap221
XM_026929207.2 mRNA downstream 186072 4596430 ~ 4618808 (-) False cfap221
XM_026929211.2 mRNA downstream 186583 4596430 ~ 4618297 (-) False cfap221
XM_026929208.2 mRNA downstream 186584 4596430 ~ 4618296 (-) True cfap221
XM_026932180.2 mRNA upstream 257612 5069360 ~ 5112747 (-) False brat1
XM_026932179.2 mRNA upstream 257612 5069360 ~ 5112747 (-) True brat1
XM_026931934.2 mRNA upstream 441945 5253693 ~ 5268198 (-) True LOC113537465
XM_026931935.1 mRNA upstream 441945 5253693 ~ 5258014 (-) False LOC113537465
XM_026931936.2 mRNA upstream 457762 5269510 ~ 5277092 (-) True LOC113537466
XR_004577360.1 other downstream 280096 4524502 ~ 4524784 (-) True LOC117596183
XR_004577367.1 other downstream 341666 4463108 ~ 4463214 (-) True LOC117596198
XR_004577366.1 other downstream 343565 4461209 ~ 4461315 (-) True LOC117596197
XR_004577365.1 other downstream 345457 4459317 ~ 4459423 (-) True LOC117596196
XR_003403643.2 other downstream 347339 4457435 ~ 4457541 (-) True LOC113535829
TU439054 other upstream 31581 4843329 ~ 4889381 (-) True G370658
XR_004577341.1 other upstream 722667 5534415 ~ 5547032 (-) False LOC113537235
XR_003403738.2 other upstream 722667 5534415 ~ 5547032 (-) False LOC113537235
XR_003403737.2 other upstream 722667 5534415 ~ 5547032 (-) False LOC113537235
XR_003403739.2 other upstream 722667 5534415 ~ 5547031 (-) False LOC113537235

Expression Profile