RNA id: TU439117


Basic Information

Item Value
RNA id TU439117
length 293
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G370705
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5062144 ~ 5062436 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCAAGAATGGCTAGGGGAAAAAACATTGGACTATTCTTAAATGGCCCTCTATGAGCCCTGATCTTAATCCTattgaacatctgtggaaaGATCTGAAATATGCAATGTGCAGAAGCCACCCTTCAAACCGCAAACAGTTagagcagtttgctcaggaagagtgggccaaaataccTGTTACCCAATGCAGAAGTCTCCTCTGCAGTACTTGGTACTGCAGACACGATGGGTTCTGAATATGGACCAGCTTTTCAGAAGTTCAGGTTCGCCTACGGAGAATAAGGAGCTCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439112 lncRNA downstream 3090 5058853 ~ 5059054 (-) True G370702
TU439109 lncRNA downstream 15898 5046040 ~ 5046246 (-) True G370699
TU439059 lncRNA downstream 148109 4896227 ~ 4914035 (-) True G370663
TU439062 lncRNA downstream 250396 4804880 ~ 4811748 (-) True G370665
TU438835 lncRNA downstream 615038 4446458 ~ 4447106 (-) True G370468
TU439118 lncRNA upstream 118 5062554 ~ 5062764 (-) True G370706
XR_004577307.1 lncRNA upstream 50317 5112753 ~ 5115118 (-) True LOC117596137
TU439123 lncRNA upstream 72402 5134838 ~ 5135130 (-) True G370711
TU439125 lncRNA upstream 73771 5136207 ~ 5136693 (-) True G370713
TU439215 lncRNA upstream 127639 5190075 ~ 5190300 (-) True G370784
XM_026929095.2 mRNA downstream 434903 4619201 ~ 4627241 (-) True knstrn
XM_026929207.2 mRNA downstream 443336 4596430 ~ 4618808 (-) False cfap221
XM_026932180.2 mRNA upstream 6924 5069360 ~ 5112747 (-) False brat1
XM_026932179.2 mRNA upstream 6924 5069360 ~ 5112747 (-) True brat1
XM_026931934.2 mRNA upstream 191257 5253693 ~ 5268198 (-) True LOC113537465
XM_026931935.1 mRNA upstream 191257 5253693 ~ 5258014 (-) False LOC113537465
XM_026931936.2 mRNA upstream 207074 5269510 ~ 5277092 (-) True LOC113537466
TU439054 other downstream 172763 4843329 ~ 4889381 (-) True G370658
XR_004577360.1 other downstream 537360 4524502 ~ 4524784 (-) True LOC117596183
XR_004577367.1 other downstream 598930 4463108 ~ 4463214 (-) True LOC117596198
XR_004577366.1 other downstream 600829 4461209 ~ 4461315 (-) True LOC117596197
XR_004577365.1 other downstream 602721 4459317 ~ 4459423 (-) True LOC117596196
XR_004577341.1 other upstream 471979 5534415 ~ 5547032 (-) False LOC113537235
XR_003403738.2 other upstream 471979 5534415 ~ 5547032 (-) False LOC113537235
XR_003403737.2 other upstream 471979 5534415 ~ 5547032 (-) False LOC113537235
XR_003403739.2 other upstream 471979 5534415 ~ 5547031 (-) False LOC113537235
XR_004577339.1 other upstream 472036 5534472 ~ 5547032 (-) False LOC113537235

Expression Profile