RNA id: TU439334


Basic Information

Item Value
RNA id TU439334
length 1630
lncRNA type sense_over
GC content 0.37
exon number 3
gene id LOC113537294
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5388904 ~ 5395012 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAACCAATGGTGCGGGGAGAACACAGCTTCGAGTTAGCTAAAAATGGAGTATGATTGCTCCAGCTCGACTTATTAGAGATTTTCTGAAGACCTGAATGCAAAGAACGAAAATGATAAACTGGCGGGCTTTAGACAACGTTCCCTTGCTGTTCTACATTCTGGCAGCCAAGACTCTTCTCTTGTGTCTTGCTTTTGCTGGAGCTAAACTGTATCAGCAGAAGAAGGCCCAGGCAGCACTGAAACAGCAGTTGGAGATGAAGAGAAAACTTGCACAGGAAACACAAGAACTTATTGACAACAAGAAGGATGACTGAACATCTTGGTGTGCTAGAGAAAGCAGGATAAACAAAAGATGTACTGCCACACCCTCACACAGAAGTATTGGTGCCATTGACAAATCTGCTGACTCGGCTACAGGTGGAGCTGTTTCCTTTGTTTACCTGGAGCTAATCAATGTTGCCTGCTACCTTTTTATTCTACACTCTTATTTATTACTCTGTGAAGCCTgtttataagtaataaaataaataaatggataactTAGGACCATTTTACATACTTTGTTTGCTTAAAAGtctgaaatgaaatgcagtCTTAGATGTTTAATgttcatgtaaataaatgaatagtaaTGGTTTCCAACATTTTGAGGAAGGGATACATCCACTGGAGTTAAAGTAATACAAAGCAATAAATACTGCTCACTCTGCTCAAATAAAGTTTTCCATTTACATACTTGATGTCATCATCTCAAATGTTCTGTATTAGagtttatgtatttacataataatgTGACGTTTCTGCTAAGGTTTCATACCATACAACAGCCTCGTCGAAAATGTTCATCATAGGGGCAATagccataaaatatttttaaaatgttatgcaaATATGAATTTTATAGCAGACAGTGGAATTTTACCAATGTGAGGGATTGCTCATGTACTGATAACTTGTGTCTGTTGGGGATAGCAACTTCTAGATACAGGTAGATATATGTCCTGACTTTGGCCAGCATTTCCCCCCAAGTGATGCACACTAAATTAAATTCTGGACATCTGACACAAGTTGAGTCTGTTGTAGAGATTCTTTACTGCCACTTCCAGTTCATAGTGTTTTAGCATTTTCACAGAGTGGCATAATTAAGAGAGTTTCTTCCTCCTAGCTTATACACTACATCATAGCCCAGCACACTGGTTTACAACATGGGACTAGACAtggaaaatatatttgaaatataataCTATCAATACTAATTAACATGTTGGACTTGTTTTGCAGTCTGGATGTTCAATAAGTCGCTACAGATGTCAGACTTACAACAGTGTATAACAATATTATACACTAGAATTAAGACTCTTTGCTATAGAGAACCATAGTGATGCAAAATTTCAGATCAAATTAATTAGCTACTTGTATTTAGTTAATGATTCATATGTTCATccattaaaaactgaaaacatttgtcCTCCAAAGTATGGGaatactttacactacactccAGTGTTGACTTCATGACATAACTCGAGAAACAATGGAAGCAGGTTGTTGTGTTATCCTACCTTATCAGGCTGTCTGACTGCATCACAAATTCAAGGTCATGTTTATCAGTGTTTCTTACCCTTCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577333.1 lncRNA downstream 23756 5345595 ~ 5365148 (-) False LOC113537484
XR_003403765.2 lncRNA downstream 23756 5357239 ~ 5365148 (-) True LOC113537484
XR_003403766.1 lncRNA downstream 23756 5362918 ~ 5365148 (-) False LOC113537484
TU439294 lncRNA downstream 45824 5342755 ~ 5343080 (-) True G370853
TU439284 lncRNA downstream 138808 5249832 ~ 5250096 (-) True G370845
XR_003403776.2 lncRNA upstream 20857 5415626 ~ 5429432 (-) False LOC113537576
XR_004577293.1 lncRNA upstream 20952 5415721 ~ 5429432 (-) True LOC113537576
TU439410 lncRNA upstream 111343 5506112 ~ 5506317 (-) True G370941
TU439411 lncRNA upstream 113333 5508102 ~ 5508369 (-) True G370942
XR_004577342.1 lncRNA upstream 115947 5510716 ~ 5518380 (-) True LOC117596170
XM_026931789.2 mRNA downstream 48383 5331920 ~ 5340521 (-) True LOC113537353
XM_026931790.2 mRNA downstream 48388 5331920 ~ 5340516 (-) False LOC113537353
XM_026931938.2 mRNA downstream 72709 5305078 ~ 5316195 (-) True LOC113537467
XM_026931939.2 mRNA downstream 90731 5288685 ~ 5298173 (-) False LOC113537467
XM_026931936.2 mRNA downstream 111812 5269510 ~ 5277092 (-) True LOC113537466
XM_026932107.2 mRNA upstream 14842 5409611 ~ 5412773 (-) True urp2
XM_026931627.2 mRNA upstream 135223 5529992 ~ 5547031 (-) False LOC113537235
XM_026931631.2 mRNA upstream 139646 5534415 ~ 5547031 (-) False LOC113537235
XM_034300297.1 mRNA upstream 140516 5535285 ~ 5547032 (-) False LOC113537235
XM_026931629.2 mRNA upstream 140516 5535285 ~ 5547032 (-) False LOC113537235
TU439054 other downstream 499523 4843329 ~ 4889381 (-) True G370658
XR_004577360.1 other downstream 864120 4524502 ~ 4524784 (-) True LOC117596183
XR_004577367.1 other downstream 925690 4463108 ~ 4463214 (-) True LOC117596198
XR_004577366.1 other downstream 927589 4461209 ~ 4461315 (-) True LOC117596197
XR_004577365.1 other downstream 929481 4459317 ~ 4459423 (-) True LOC117596196
XR_004577341.1 other upstream 139646 5534415 ~ 5547032 (-) False LOC113537235
XR_003403738.2 other upstream 139646 5534415 ~ 5547032 (-) False LOC113537235
XR_003403737.2 other upstream 139646 5534415 ~ 5547032 (-) False LOC113537235
XR_003403739.2 other upstream 139646 5534415 ~ 5547031 (-) False LOC113537235
XR_004577339.1 other upstream 139703 5534472 ~ 5547032 (-) False LOC113537235

Expression Profile