RNA id: TU439410


Basic Information

Item Value
RNA id TU439410
length 206
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G370941
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5506112 ~ 5506317 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCTACTGGAAAAACATAGAGGTAGTAGGCTGTGGTGGTTTACAGAGGCACACCGCAATCATCTGTAGACCTCAACACCCTGTTTCTATTAACATACCACCAACCACCACATTAGCATAAAAAGTTGGTGGATAACCATCAACCACAATAAAACATACCtaaccacacacagacactctcaTAAACATACTTCACTAATTTCTTG

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403776.2 lncRNA downstream 76680 5415626 ~ 5429432 (-) False LOC113537576
XR_004577293.1 lncRNA downstream 76680 5415721 ~ 5429432 (-) True LOC113537576
TU439335 lncRNA downstream 111100 5389822 ~ 5395012 (-) False LOC113537294
TU439334 lncRNA downstream 111343 5388904 ~ 5394769 (-) True LOC113537294
TU439411 lncRNA upstream 1785 5508102 ~ 5508369 (-) True G370942
XR_004577342.1 lncRNA upstream 4399 5510716 ~ 5518380 (-) True LOC117596170
TU439645 lncRNA upstream 374159 5880476 ~ 5885612 (-) True G371117
XR_004577356.1 lncRNA upstream 380529 5886846 ~ 5891797 (-) True LOC117596178
TU439651 lncRNA upstream 386009 5892326 ~ 5895688 (-) True G371121
XM_026932107.2 mRNA downstream 93339 5409611 ~ 5412773 (-) True urp2
XM_026931711.2 mRNA downstream 111300 5389798 ~ 5394812 (-) False LOC113537294
XM_026931789.2 mRNA downstream 165591 5331920 ~ 5340521 (-) True LOC113537353
XM_026931790.2 mRNA downstream 165596 5331920 ~ 5340516 (-) False LOC113537353
XM_026931938.2 mRNA downstream 189917 5305078 ~ 5316195 (-) True LOC113537467
XM_026931627.2 mRNA upstream 23675 5529992 ~ 5547031 (-) False LOC113537235
XM_026931631.2 mRNA upstream 28098 5534415 ~ 5547031 (-) False LOC113537235
XM_034300297.1 mRNA upstream 28968 5535285 ~ 5547032 (-) False LOC113537235
XM_026931629.2 mRNA upstream 28968 5535285 ~ 5547032 (-) False LOC113537235
XM_026931628.2 mRNA upstream 28968 5535285 ~ 5547032 (-) True LOC113537235
TU439054 other downstream 616731 4843329 ~ 4889381 (-) True G370658
XR_004577360.1 other downstream 981328 4524502 ~ 4524784 (-) True LOC117596183
XR_004577367.1 other downstream 1042898 4463108 ~ 4463214 (-) True LOC117596198
XR_004577366.1 other downstream 1044797 4461209 ~ 4461315 (-) True LOC117596197
XR_004577365.1 other downstream 1046689 4459317 ~ 4459423 (-) True LOC117596196
XR_004577341.1 other upstream 28098 5534415 ~ 5547032 (-) False LOC113537235
XR_003403738.2 other upstream 28098 5534415 ~ 5547032 (-) False LOC113537235
XR_003403737.2 other upstream 28098 5534415 ~ 5547032 (-) False LOC113537235
XR_003403739.2 other upstream 28098 5534415 ~ 5547031 (-) False LOC113537235
XR_004577339.1 other upstream 28155 5534472 ~ 5547032 (-) False LOC113537235

Expression Profile