RNA id: TU439645


Basic Information

Item Value
RNA id TU439645
length 3102
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G371117
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5880476 ~ 5885612 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGTATGTACATTCAAAACTTTATTTATGGAATACAGTGTATAAAGCATAGTGTTTCCAGTCAAAGCAAATGTTCCATACACTTACACAGAGGAAGAAACAGtcacacagaaagaaaatgaatcctGCTTTCTGTATCTACAATGCAGTGTCACTGCATCCCTAATGCCTTCCTAAGCCTCAGTCAGAAAACTGCAACCACAATCACTTTATCTATTTAACCAACGATATCAGAGTTATATACATCTTTTTTTGTGATTACCCGGATAGCTCAAAcggatacagaaaaaaaatccccagaAAACATGACACTCACGAGAACAGTGAGTTTCAGTTGAACACATTCTGTTTGTTTAAAGACACTCACCACAGCAGTGCAGACGTTTTAATGCATGCTAGATGGGTAGAGTAGTTTGTGTCACATTCATCAGAAGAGCTGAGTGAGGGGTTTCAGACTGAGACGATTACTTCCAGTCCAAAGACCCATCActtgaaaaaacaaatctgcTCACTTTAATCCATAACCTGAAAATATTGCAGATATGATCTTAGCAAGTAGCCACTGCTCCAAGATCACTTTTTACATGAATTAACCTACTTGCCTTTTTAAATCAGGGAAATAAATGGTGTGGATATAAATGCACTGCTTTCCATTTCTACCAGTGTTCTTTCACTCTGGTTGCCAGATCTGCCCAATATCCTTCTGTGCAGCGATTCATACCCTAGTGAAAATAACTGGCTTGCATGGATCCAATCTAGCAACCTTTAATAAACTGCATCATAAAAAAACGACTAAAGCATAGCACAAGACAAGGACAGGAAAGAGATTGGACTGTCTATCCAAGAGACATAAAATaatttcttctcatttttctcatttcctttcaTCCTCCATGTCTTTCACTTGTTTCAGTGTAATCACACCCACTTCTGCACTGCAGCAGCCAAGTAAGAGATGagacatgagagaaaaaaagaagcctCTTTGGTTGCGAATGTGTTACAGGAAACTAGAGGCTGAAGGAAAGAAGGTTTTGTACTTCACATGGGGttgtacaaaaacacaaacttcaCTGGAgagaacatacaaacacatacagtgaATCCCTACCTCCCAAACCCTAAATACCCTAGATCCTGAAACCCCATTACAAAACACATCCAACCATGTGAATCCAAACggaaactgaaattaaatagcgtggaaacagagagagagagagagagagggagagagaatagATCTCTGAAATGCATAGGATGAAAACACATTAAGCTAGAAATATACACACTGATTTTTCCAGCCCCCAGTAGCTGGAGGAActcaaagtaaaaaataaagataaacgATAAAGAAAATCACGGTTCTTGTAAATCATGTCTGTATAAAATCAAAGCAGAAAGCCAATTGGACTACTTCTGTTGCTCATTAGTGAAACTGAAGTCATGTTCATGAGAAGATAGTAAATGTTGAAACCCTGCTAAAATGACAATCTCTACGTGAGAAAGGACCCATTCAGACAACagagtttttcttcatttttttatcatGCACTAAATAGGTACAGCTATTTTTCTGCATTACGACAATACATTAGACGCAACGAAAGAAAAACTTCTCTTTAtccatgatttttctttttttcttgaaaaaaatcttaaaattaaGTGTTCATTCAAGAGTACATTAGGGTTATCACTATAATCTTATCGTCAtgattttaatccttttttaatccaccacagcacagctgtcatcaaagcaCACAATGGGATAAGGACAGGAAgtgaagaagaaggaaaaaaaaaaaaaaaaaacaggaatagtGTCTTTAACAATAATCAGTTATATCCCAGTGTTCAGCAGTTAAAGTAGTGTGGGAATGGACAGTGTGGGGGACACACGCGCAAAATCCGTAAACTCAGATCTGAGATCAGGCAAGTTTCATTCTAATCAAGAAAAAATCCCAACACCTGGCCCTGAATCGGTGCTTAAGGGCATCTTCACTACATGTATAAATTAAGAGGTTTGACCAGTTTATATGCATCTTTTTGACAAGTGACCAATCACAAGTGACTGTGCTTATGGCACCACGAGATATGTACTACGGGGAGTGAGTCCTTCCCTACACTGTCCAGAGTGGGGTAAAAAGgaaggggttaggggttaggggacTACAGCCTAGCACATAGATCATTAGTTCATCTGCTCAAAGAACTTATAGGTTGGATTCTCGTAGCCGTTCTGCTGCATCTTAGAAAGATGGCGCTCTTCTGGAGTGATGGCGGCATCCACctgCAATCACACCGTGGTGGATGGATGTGTACTGCTTCTTTCGCAGCATTACCAGGGTGATGACAATGACAGTCGCTATGACGACACCTCCTACCATCAGGCCAATAATAGCACCCTTGTTAGAGCTGACGTCTTCAGCGAAGAAAACAGTTTCTGGTGGTGCACTTCATAAGCAGCGTTGTGCCTCTCCTCTGCCTCCATCCTCAGCTCAGGAACATCCTCAGGCTTCAGACCAGATACTGAAACCAAACAGAGCAAAGGAGAATGAAGGGTGTGTGAGAATTATAGGtgcaattttaacaattttatgTAAGATTAAATGTTGCACTTTAAACTTTCCACTTTAGAATTTCCTTTCAAATGAACTATAAAAACTTTAAGGAACCCAAAAGTGTATCATAATACTGTAGTAATGCTCACAGTAATATGCCTTTACATCATGTAAAGGtgtagtttgtcattttttttaaggtgaaggctaGACACTAGAATTTATAATCAGATTACCAAATTACAAGCtcctttaatttaaaatgaacattttcactAGCCTATTGTATTAGATGCATTGTAGTAAATGTACCTGGGCGAGTAGGAAGCCCTCTGTCAGAGAAGGGACGTACATCAACAGGCTCAACTGCGGAGAGATGAAAGAGTTCATTGTGAGGGTAGATGGTCTATTAGTTATGGTGTGTTGTAAGTTCTCATGAATATAGAGTGTAAAAATAATACCTTTGTATTTCTGGAATGTAATACTAAATACACATCTCGatgaacattaattaacatttaattattgcTTTTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577342.1 lncRNA downstream 362096 5510716 ~ 5518380 (-) True LOC117596170
TU439411 lncRNA downstream 372107 5508102 ~ 5508369 (-) True G370942
TU439410 lncRNA downstream 374159 5506112 ~ 5506317 (-) True G370941
XR_003403776.2 lncRNA downstream 451044 5415626 ~ 5429432 (-) False LOC113537576
XR_004577293.1 lncRNA downstream 451044 5415721 ~ 5429432 (-) True LOC113537576
XR_004577356.1 lncRNA upstream 1234 5886846 ~ 5891797 (-) True LOC117596178
TU439651 lncRNA upstream 6714 5892326 ~ 5895688 (-) True G371121
TU439680 lncRNA upstream 107877 5993489 ~ 5994747 (-) True G371147
TU439686 lncRNA upstream 112391 5998003 ~ 5998159 (-) True G371152
TU439687 lncRNA upstream 113236 5998848 ~ 5999474 (-) True G371153
XM_026931827.2 mRNA downstream 284381 5589772 ~ 5596095 (-) False n6amt1
XM_034300092.1 mRNA downstream 284540 5589772 ~ 5595936 (-) True n6amt1
XM_034300024.1 mRNA downstream 323386 5549553 ~ 5557090 (-) True wu:fa56d06
XM_034300297.1 mRNA downstream 333444 5535285 ~ 5547032 (-) False LOC113537235
XM_026931629.2 mRNA downstream 333444 5535285 ~ 5547032 (-) False LOC113537235
XM_026931654.2 mRNA upstream 10724 5896336 ~ 5908867 (-) False jam2a
XM_026931653.2 mRNA upstream 10724 5896336 ~ 5908867 (-) True jam2a
XM_026931713.2 mRNA upstream 28347 5913959 ~ 5920199 (-) True mrpl39
XM_026932220.2 mRNA upstream 56427 5942039 ~ 5952313 (-) False LOC113537623
XM_034300324.1 mRNA upstream 56427 5942039 ~ 5952113 (-) True LOC113537623
XR_004577341.1 other downstream 333444 5534415 ~ 5547032 (-) False LOC113537235
XR_003403738.2 other downstream 333444 5534415 ~ 5547032 (-) False LOC113537235
XR_003403737.2 other downstream 333444 5534415 ~ 5547032 (-) False LOC113537235
XR_004577339.1 other downstream 333444 5534472 ~ 5547032 (-) False LOC113537235
XR_004577340.1 other downstream 333444 5536781 ~ 5547032 (-) False LOC113537235
XR_003403780.2 other upstream 56817 5942429 ~ 5952313 (-) False LOC113537623
XR_004577328.1 other upstream 134075 6019687 ~ 6033393 (-) False tpp2
XR_004577329.1 other upstream 473027 6358639 ~ 6363203 (-) False LOC113537742
XR_004577289.1 other upstream 1173223 7058835 ~ 7068467 (-) False LOC113537271
TU440391 other upstream 1173223 7058835 ~ 7068531 (-) True LOC113537271

Expression Profile