RNA id: TU439651


Basic Information

Item Value
RNA id TU439651
length 1384
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id G371121
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5892326 ~ 5895688 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tGTAATCCTTTAATTTAATTGACTTAAATTAAGTCAGTgacaaaaactgtttaaaaatgaatcctTTCGAGTCTATGACTTTAGAAGCTGTATAGGTTAAACCTGTACCACATCTCAAAAGGCTGAGTGCTATAGTACTGTACTGTAGTTATTTCACATATCATAATCTTATTTTTGATGAGGGCGTCTGACATTTTTTATCCAGTAGGAGAAGGACTTTATTATGATGGGTGGATAAAAAATTAAGAACATTCTACCCATTTTTCAACCAAGggctttattaaataattattttcatcACTCAGAATGACAGACATAAGCAGTTTTGAGCAGAGGGATGCTCACTTGGCCACCTCCTCCAGCTTGGGCTctgttgaattaaaaaaacagaacaaggGTTTAGTGGACTGACATCACACAAGTAGACgcaaaatataattattcatGGTGACATTATTAAACTACACAGTGTTAAATCATAAGAGGTAAAATGAAATCAAGAGCCTACAATCCTGGTTTACAGAGTCAGCTAGAAATCCTTCTGGCTAAGCACACACAATTCAGTACTCTGTTACAGAATAGGTTATTTCTGTCAATGAGGGATCAGGGATTTGTTTCTGTAATCTGTTGTATCATGCTGTACTATCTGCTGGACATATGTTATAACTGTAATAATTTTCCACCAGATGCTGCAGCACAGTTCAATGTCACTATTTTCACTGCCGATTGAGCCATGCTGTACTTAAATATCAGGTGCGACTAAAATACTGCAGATCATCAAATGATCACACAGTTGCACAGACTGCAGTTTAGTGTCTCTGCCTGGAATTGCTATAGGAGTATTACTGCACCACCACGCTGCAGATCCAAAACTGACCTGTGAATTTGAATTCGGGGAATTTAGTCAGGTCACCTCCTCCATATAACCTTTGCAGTTTGTTAATCTCTTCTGTCATGTTCTTCTGGTAGCTGGGGCCAGCATCAACCACTCCGGCTGCACTTGCTCTTGACGTTGTACTCGCGGATTTTGTCCAGAAAGAGTTTCTGTACAGGGTCCAGATCTTTAGCCCTGTTAAAAAGGACAGCAGAGATGCCGATGTTCCTGCGCAGAGTCACACTCACAGCCGAGCGGAAGACTGAGGAGAGCTGAAAGAGCCGACGGAGTGCCATGCTGTCTCTGCAAGTTGCTTCCGTTCACAGGCAATGGCCGCCTCACCGACGCAGAGTATTGTGggtatttttcttcttctccttctgctTGGTATTTTTTCCCTACCCGTATTTAATAAATCTCACTTCCGGTTAAGAGACGACTCTCTGATTCGTAAACTCCCTGTAAGGAAGAATGTACGTCCAATCATAACGAAGGAGGCGGGACTTTTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577356.1 lncRNA downstream 529 5886846 ~ 5891797 (-) True LOC117596178
TU439645 lncRNA downstream 6714 5880476 ~ 5885612 (-) True G371117
XR_004577342.1 lncRNA downstream 373946 5510716 ~ 5518380 (-) True LOC117596170
TU439411 lncRNA downstream 383957 5508102 ~ 5508369 (-) True G370942
TU439410 lncRNA downstream 386009 5506112 ~ 5506317 (-) True G370941
TU439680 lncRNA upstream 97801 5993489 ~ 5994747 (-) True G371147
TU439686 lncRNA upstream 102315 5998003 ~ 5998159 (-) True G371152
TU439687 lncRNA upstream 103160 5998848 ~ 5999474 (-) True G371153
TU439665 lncRNA upstream 105491 6001179 ~ 6001613 (-) True G371135
TU439664 lncRNA upstream 106150 6001838 ~ 6004790 (-) True G371134
XM_026931827.2 mRNA downstream 296231 5589772 ~ 5596095 (-) False n6amt1
XM_034300092.1 mRNA downstream 296390 5589772 ~ 5595936 (-) True n6amt1
XM_034300024.1 mRNA downstream 335236 5549553 ~ 5557090 (-) True wu:fa56d06
XM_034300297.1 mRNA downstream 345294 5535285 ~ 5547032 (-) False LOC113537235
XM_026931654.2 mRNA upstream 648 5896336 ~ 5908867 (-) False jam2a
XM_026931653.2 mRNA upstream 648 5896336 ~ 5908867 (-) True jam2a
XM_026931713.2 mRNA upstream 18271 5913959 ~ 5920199 (-) True mrpl39
XM_026932220.2 mRNA upstream 46351 5942039 ~ 5952313 (-) False LOC113537623
XM_034300324.1 mRNA upstream 46351 5942039 ~ 5952113 (-) True LOC113537623
XR_003403738.2 other downstream 345294 5534415 ~ 5547032 (-) False LOC113537235
XR_003403780.2 other upstream 46741 5942429 ~ 5952313 (-) False LOC113537623
XR_004577328.1 other upstream 123999 6019687 ~ 6033393 (-) False tpp2
XR_004577329.1 other upstream 462951 6358639 ~ 6363203 (-) False LOC113537742
XR_004577289.1 other upstream 1163147 7058835 ~ 7068467 (-) False LOC113537271
TU440391 other upstream 1163147 7058835 ~ 7068531 (-) True LOC113537271

Expression Profile