RNA id: TU439665


Basic Information

Item Value
RNA id TU439665
length 435
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G371135
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6001179 ~ 6001613 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaaaaataaaactaacttGTAAATACGCCAATTACAAAACAATGGTTTGAATACTTGAGTAGTCTGGTCAGCAAAAGGAAACTTACTGAGGGCCATAGCACAGCACCGTAACAATCAGTCGACTCTTTGATTTTAATCTCCAGATTGGCAAACGTATATCCCTCCCACGCTTCGGATTTGATCAGAGATGGTCGGAAATGTCTCTTCGTAATAGCTGCTGCCAGCTCAGCATCTGGAGTAACTTCTGTGGCATGAAACACAAGCAACAATGGAAAAGGAAATTATTTGGAAAAAAGGGGTAGAAGTACAcaaattctttactcaagtaaatgCTCACATACTCATCTAAAACAAAACTATCTTAAAAGTTGAAATATACAGTAGCTTCAAATTCTTTACTTAAATTAGAGTACAAAAGTACAAACTCTTAAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439687 lncRNA downstream 1705 5998848 ~ 5999474 (-) True G371153
TU439686 lncRNA downstream 3020 5998003 ~ 5998159 (-) True G371152
TU439680 lncRNA downstream 6432 5993489 ~ 5994747 (-) True G371147
TU439651 lncRNA downstream 105491 5892326 ~ 5895688 (-) True G371121
XR_004577356.1 lncRNA downstream 109382 5886846 ~ 5891797 (-) True LOC117596178
TU439664 lncRNA upstream 225 6001838 ~ 6004790 (-) True G371134
TU439992 lncRNA upstream 360941 6362554 ~ 6363151 (-) False LOC113537742
TU440057 lncRNA upstream 527784 6529397 ~ 6536004 (-) True G371454
TU440098 lncRNA upstream 562236 6563849 ~ 6566945 (-) True G371487
TU440232 lncRNA upstream 806880 6808493 ~ 6815071 (-) True G371595
XM_026931773.2 mRNA downstream 17382 5976377 ~ 5983797 (-) True blzf1
XM_034300228.1 mRNA downstream 17605 5976377 ~ 5983574 (-) False blzf1
XM_026932062.2 mRNA downstream 27740 5971040 ~ 5973439 (-) True txnl4b
XM_034300231.1 mRNA downstream 32114 5963752 ~ 5969065 (-) True mrpl16
XM_026932220.2 mRNA downstream 48866 5942039 ~ 5952313 (-) False LOC113537623
XM_026932021.2 mRNA upstream 14113 6015726 ~ 6033393 (-) True tpp2
XM_026932022.2 mRNA upstream 14113 6015726 ~ 6033392 (-) False tpp2
XM_026932176.2 mRNA upstream 134894 6136507 ~ 6160962 (-) True LOC113537602
XM_034300227.1 mRNA upstream 160501 6162114 ~ 6190394 (-) True cenpe
XM_026932058.2 mRNA upstream 190015 6191628 ~ 6200180 (-) True grk1a
XR_003403780.2 other downstream 48866 5942429 ~ 5952313 (-) False LOC113537623
XR_003403737.2 other downstream 454147 5534415 ~ 5547032 (-) False LOC113537235
XR_004577328.1 other upstream 18074 6019687 ~ 6033393 (-) False tpp2
XR_004577329.1 other upstream 357026 6358639 ~ 6363203 (-) False LOC113537742
XR_004577289.1 other upstream 1057222 7058835 ~ 7068467 (-) False LOC113537271
TU440391 other upstream 1057222 7058835 ~ 7068531 (-) True LOC113537271
TU440780 other upstream 1716650 7718263 ~ 7724795 (-) True G372086

Expression Profile