RNA id: TU439686


Basic Information

Item Value
RNA id TU439686
length 157
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G371152
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5998003 ~ 5998159 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCATGATCAAATTGTGGAAGCAttgtacataaatatattacCTCAGTTTTCTGCcataatttaatgttatttcattCACATCATAGGCTTTAGTCACCTTTTGCCTTATagatatgcaaaaataatatttaggtAATTTGTCATCATAAGTTTTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439680 lncRNA downstream 3256 5993489 ~ 5994747 (-) True G371147
TU439651 lncRNA downstream 102315 5892326 ~ 5895688 (-) True G371121
XR_004577356.1 lncRNA downstream 106206 5886846 ~ 5891797 (-) True LOC117596178
TU439645 lncRNA downstream 112391 5880476 ~ 5885612 (-) True G371117
XR_004577342.1 lncRNA downstream 479623 5510716 ~ 5518380 (-) True LOC117596170
TU439687 lncRNA upstream 689 5998848 ~ 5999474 (-) True G371153
TU439665 lncRNA upstream 3020 6001179 ~ 6001613 (-) True G371135
TU439664 lncRNA upstream 3679 6001838 ~ 6004790 (-) True G371134
TU439992 lncRNA upstream 364395 6362554 ~ 6363151 (-) False LOC113537742
TU440057 lncRNA upstream 531238 6529397 ~ 6536004 (-) True G371454
XM_026931773.2 mRNA downstream 14206 5976377 ~ 5983797 (-) True blzf1
XM_034300228.1 mRNA downstream 14429 5976377 ~ 5983574 (-) False blzf1
XM_026932062.2 mRNA downstream 24564 5971040 ~ 5973439 (-) True txnl4b
XM_034300231.1 mRNA downstream 28938 5963752 ~ 5969065 (-) True mrpl16
XM_026932220.2 mRNA downstream 45690 5942039 ~ 5952313 (-) False LOC113537623
XM_026932021.2 mRNA upstream 17567 6015726 ~ 6033393 (-) True tpp2
XM_026932022.2 mRNA upstream 17567 6015726 ~ 6033392 (-) False tpp2
XM_026932176.2 mRNA upstream 138348 6136507 ~ 6160962 (-) True LOC113537602
XM_034300227.1 mRNA upstream 163955 6162114 ~ 6190394 (-) True cenpe
XM_026932058.2 mRNA upstream 193469 6191628 ~ 6200180 (-) True grk1a
XR_003403780.2 other downstream 45690 5942429 ~ 5952313 (-) False LOC113537623
XR_003403737.2 other downstream 450971 5534415 ~ 5547032 (-) False LOC113537235
XR_004577328.1 other upstream 21528 6019687 ~ 6033393 (-) False tpp2
XR_004577329.1 other upstream 360480 6358639 ~ 6363203 (-) False LOC113537742
XR_004577289.1 other upstream 1060676 7058835 ~ 7068467 (-) False LOC113537271
TU440391 other upstream 1060676 7058835 ~ 7068531 (-) True LOC113537271
TU440780 other upstream 1720104 7718263 ~ 7724795 (-) True G372086

Expression Profile