RNA id: XM_034300225.1


Basic Information

Item Value
RNA id XM_034300225.1
length 1464
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC113537742
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6358639 ~ 6363203 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTCTTGTAACAGCAAAATATATTGGGAGGCGAATGTGGCTAACAGAGCAGAGATAAaggcaaaaagagaaaatctgtCAGTAATAAAGCATTTGAGCATTTATTCAATTGTGATGAAGTTTCAGTTATGGAGTTTCTTCTATTTCAAACTGCACAGCTACTACCTGCTGACCATCGCTGACCAAACAGTTTTCCAGTCTGATCCACAAGCCAAGGCCATCTTTATCCGGCCTAAACATGCCAATACATTCTTTGTGGAGGAAATTCTAAAGGGCCATTTGGAAAGAGAGTGTTATGAGGAAAGATGCAACAAGGAGGAGGCCAGAGAGGTCTTTGAGGACAACGAGAAAAAGCTTTGACCTAGGAACTCCTCTTTCTGAGAATGTGACATAATTAGATGGAGATCAGTGTAAACCCAATCCTTGTCAACATGGTGGCACCTGTAAAGACAAGATAGGAGGCTATAGCTGCAAGTGTACTGACATGTACACAGGACATAACTGTGAAAACGATGTTTCTGAATGCCCTTCTGGAGGCCCTCTGGTTTGTGAACACTACTGCAGACCCTTACCTGAATCATACCGATGCTTCTGCGCCAGAGGCTACAGCCTTAGAGCTACACACCTTGGGGATCCATGTGGGAATGTCAGGGTCTCATCTGACTCTACCAGTAGGAATATGACTCAAAATGACCCCATCTGCCCACAAGGAAAATGTCCATGGCAGGTGACCTTTGTGGATGTCTTTGGTGATGTAATCTGTCATGGCGTGATCCTTGGAAGGAGGTCTATACTCACTACAGCTGCATGCATGACAACAGACAAAGATCTTTCCTTGATCATTGGCCACTCAAATGAAAAGATAAATGCTTCTCAAGTGACCAAAAGGACTCTTCATAATAGGTATTTGACTCTTGATCCTGATGACGACTTGGCTGATTGCTTTGGGTCCGGGCACCATCCAGCTCTGCCTCCCAGAAAAAAGACTTCAGAGAAAACAGCTTGATGAAAAGTGGTAAGTGGGTGGAGCCAATAAACTTTCATACCTCTCACTGGACATCTGCCATTCCAAACTCAACCTGAGCTTCTGCTTGACCAATAAGATGTTTTGTGTGAAGGAGCGAGAGCCTGAATGTATTGTAAGGAGACTGTCACAACACAAAGAGCGTGATCTTACATCTGGGTCTCCTGTGGCCACAGTGGAAGGAAATACAGCTTTCCTAACTGGACTGTTCCTCTCCCAAAATGACTGCAGTCAGGAATGCGTGTTCACCAAAATTTTGAGATATCTACCGTGGATCCGCAAACTTCTACTGAGAACCGAGGCAGTGCAACATGACACATTTTGGCAGAAGCTTAGTCTCCAGGATGCAACTGTTTTAACAAGATTACATCAATTAACCTGCTTTCAGAATGAACctgttgtttcattttgtgctaaaatgcacattttaaagACTTCCTC

Function

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439664 lncRNA downstream 353849 6001838 ~ 6004790 (-) True G371134
TU439665 lncRNA downstream 357026 6001179 ~ 6001613 (-) True G371135
TU439687 lncRNA downstream 359165 5998848 ~ 5999474 (-) True G371153
TU439686 lncRNA downstream 360480 5998003 ~ 5998159 (-) True G371152
TU439680 lncRNA downstream 363892 5993489 ~ 5994747 (-) True G371147
TU440057 lncRNA upstream 166194 6529397 ~ 6536004 (-) True G371454
TU440098 lncRNA upstream 200646 6563849 ~ 6566945 (-) True G371487
TU440232 lncRNA upstream 445290 6808493 ~ 6815071 (-) True G371595
TU440272 lncRNA upstream 504541 6867744 ~ 6867960 (-) True G371632
TU440266 lncRNA upstream 507369 6870572 ~ 6874420 (-) True pspc1
XM_034300224.1 mRNA downstream 28364 6326777 ~ 6330275 (-) True LOC117596162
XM_034300258.1 mRNA downstream 41180 6295380 ~ 6317459 (-) True cul4a
XM_026932227.2 mRNA downstream 65892 6279824 ~ 6292747 (-) True lamp1a
XM_026931930.2 mRNA downstream 120061 6226053 ~ 6238578 (-) True tmco3
XM_026931690.2 mRNA downstream 136084 6203697 ~ 6222555 (-) False tfdp1b
XM_026932064.2 mRNA upstream 609 6363812 ~ 6380175 (-) False LOC113537543
XM_026932063.2 mRNA upstream 609 6363812 ~ 6368888 (-) True LOC113537543
XM_026932065.2 mRNA upstream 9172 6372375 ~ 6378994 (-) True f7i
XM_026932311.2 mRNA upstream 17126 6380329 ~ 6384799 (-) True f7
XM_026932313.2 mRNA upstream 21696 6384899 ~ 6392466 (-) True f7l
XR_004577328.1 other downstream 325246 6019687 ~ 6033393 (-) False tpp2
XR_003403780.2 other downstream 406326 5942429 ~ 5952313 (-) False LOC113537623
XR_004577339.1 other downstream 811607 5534472 ~ 5547032 (-) False LOC113537235
XR_004577340.1 other downstream 811607 5536781 ~ 5547032 (-) False LOC113537235
XR_003403739.2 other downstream 811608 5534415 ~ 5547031 (-) False LOC113537235
XR_004577289.1 other upstream 695632 7058835 ~ 7068467 (-) False LOC113537271
TU440391 other upstream 695632 7058835 ~ 7068531 (-) True LOC113537271
TU440780 other upstream 1355060 7718263 ~ 7724795 (-) True G372086
TU440974 other upstream 1549263 7912466 ~ 7916321 (-) False fam155a
TU441267 other upstream 1957781 8320984 ~ 8329026 (-) False timmdc1

Expression Profile