RNA id: TU440098


Basic Information

Item Value
RNA id TU440098
length 3074
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G371487
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6563849 ~ 6566945 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgataagagtcttcaaagcacttttgtaagtggCTCTGgataaatgccataaatgtaaatgtaatcagCTACTCAAAGCAGGATGgtgtcattttaattaaaattccaGACTACAAGGTGAATGATAATGTGCCGTGTTTCGCAGCACGAGTTACACAATTGCATTCCTTGCTTGTGGTCAACAGCCATAGTCCCGTATTCTGTATTTTTGCAGTTTACCTCACTGCCAAACACATGAATAACTGTCAGTCGAGAATGTAATGGATTTAAATTTAGCTCTTTTTTATTGGATGGAAAAGAATGTGCAGTACATTTGGGGTACTACCTGAAGAAAGCATTTCtgtagcaaaataaataaatcagcatggCATTATGGGATAGgtggtacATTATAAAAGCATGTACGTCACAGAACAGCTAAGAAAGTTTTTCCCTTTTGTGACATTAACACAGATTAGATATTAGATAAAGAGTTATGAAAGCAGTGAGTGCATTTTTGTCATTCTTATACAGCTAATATATGCCTGAGTATTTGTCTGTTCATGATAACCCTAGTGTTTGTATGCTGCTAGATTGAGATGTCTGTCAGAGAGACACTTATTATGTTATAACAATAGACAAGGACTCTCAGTGCATGAGTCACTCTTAGTGAAACACGCTCTCATTGACAGCACAACACTCCTAGCACATGTGGACAGATAAACGCCTCACACCAGGTTTTACATTAGACACGCTGATTTAACGTGacataccttttttttctgaatacaTTAAAGGAACACTCCAGCATTTTAAACCTAATCTCTAAACACCACATCTatagtaatatactgtatgtgtgtttaccACTGACAAGTCATAGGACTAGAGGGACTGGGATCCAACAGTCTTTTTACTCTCATGCGGGAGGTTTGATACGAAGCACATGAGACAAAAAAGCCACGCTGATTTACATGAGTGTGTTGGCCAGGGCGCAATGCATTTGCCTCGTTCCATCACTCGTGTTCTGTAGATGCTTTATGAAGGTCAGGGGCACTGGAATGGGAAGTCTTTTGACATTTCGcagtactgagaaaagaacgtTTATTGAAACTTCATTTGTAATGGAAGTCTTAGGATAGTTGTTGGGGCAGCCAATAAATGTGTACATGAATCCTGTATACTGTGTTGAAAGGTTTAATTcttcagtcagtcagacagaaTTTGATTATTACACTCTAAAGCTGTAAAATCCATCCTTTTGGAGATGAAACTATTTTTTTAGAGGGAAGAATTTATGGTATGAGTTATCAATGTAGAAAACAAGTATTTCAGTTCACAATTGATTCAGTATTGAGACCACAACATCTTTGGGATTGCTTTTTACTGCATTGCAAATTGAATTCAATTATGGATAAAGGCTTGTTAAGCCATTCTCTCTCATATATGTGTTTCATCCTTAGACCTTTATATTTAGTGTTAGTCTGTGGCACAGTGGCAGAGCATCTAGCATCGCCAACTCACAGCTCAGGGTTTCAGGTTTGATCCAAACTCCATAAGTTACTGTTTGTTCGTTGCTTCACTTGTTATCCCTGTGAGTTATCTCTGGGTTTTCCGGTTCTCTCCCTCTTCCAATGAACACACTGGAAGGTGGATTAGTTACTCTAAATTTTGCCTAGGagtcacgtgtgtgtgtgtgttggtgggtgtgtataatataatgcCCTGCATTGGACTGGCGTCTCATTCAGTGTGTATTCCAGCTTTGCGTGCAGTGTTTCCAGATCTGCAACGAGGAGAAAGCAGTCACTAATTAGGAATGAATTAAATAGTTGGCTGTAGTTTTGTATTTGTgctactatactgtatattcacattTTGAACATTACTGACCAATATCTGCCATTAGACATCTATAATATGTTAGTTTCAATTAAGCAGgtgttcgtttttttttctcagtacataTCAGTCTTGTCTGTGGTATGCAGTCTGTGCACTATATTCACATTTTAGATGTAATACACAGAGATTAGGTTAAAACGAGCTGGCATGTTCCTCTAGCCATAGTTAAGTTAATGACATGATTTAGTATTAAACATAAAGAGTAAAACAAAACCTGGATATAGCAATAACAActgttaaaagtaaaaaaaaaagcactatgtaaacatacagtatataggaataaatagaaaaatcttCATAGGCAAAAAggcataatattaataattgtcAAGTTTCTCAACTATTCCTTTTATATTAAAACAGACGTAGGCAAAGTATggaaaaaagttcatttttccCGATTATAGAGCACACGTGGCATTGTTTGTTGGCACATTATGTGATAGCGGCAATGAGGGATGCAAATCTCAGGACGCCACAAAAGGTACATGACGTCAtccagtgcctgatctcacacAGCAACGTGGACTCCTGGTGACGTCGGGTGAACTCATCCTGGTGTGTCATCACaaagacttgtgtgtgtgttccatgtGCACAGTTAAGGCCCATTATGCTTATGTCAATCTCAACCTCTGTAAGGTTTTCATTACTCATAATGCTATATCATGTTCCTGCAATGACAGTATGTGTCCTATCTGATCAAATAAACAGATACTGTCCCTCCAGTTCATTTTAATTACGTCCACTTTGTATCGTGGCAGAAGTTCCTTGTGAACTCATCAACCTTCACTTCAAAATGTTAGAAGAATAATAGTTTGGAGGTACCATCAAATAAAATACTACCACAGAGCAATCTTTGATCTCATCTTCATAAAACTCTAGCTCCACTGGCTTCCCAGTTATAAGCTTCTTGACTGCTCAAAGTCCAGATAAGTAACAGttgttttctttaagaaaacaaaGCTTCTTTGTTAACTCAAGCTTTTCCAGCACAGTTTGGATGTTGCTGTAATAAATACTTGTCCTCCTTTTAATCCTCGGAGCATTCCAGGATGTCTGACCGCCAATTAGCACGTAAAAACTGTGGAGATCAGTGCGCAGAGTGGGAAGCCTAGAGATGCTGGTTGGAGAGCAAGTGCGTGTGAGACCTGCCTTTGCTGGTCAGACTATGAGTGAATCTCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU440057 lncRNA downstream 27845 6529397 ~ 6536004 (-) True G371454
TU439992 lncRNA downstream 200698 6362554 ~ 6363151 (-) False LOC113537742
TU439664 lncRNA downstream 559059 6001838 ~ 6004790 (-) True G371134
TU439665 lncRNA downstream 562236 6001179 ~ 6001613 (-) True G371135
TU439687 lncRNA downstream 564375 5998848 ~ 5999474 (-) True G371153
TU440232 lncRNA upstream 241548 6808493 ~ 6815071 (-) True G371595
TU440272 lncRNA upstream 300799 6867744 ~ 6867960 (-) True G371632
TU440266 lncRNA upstream 303627 6870572 ~ 6874420 (-) True pspc1
TU440265 lncRNA upstream 312925 6879870 ~ 6881780 (-) True G371625
TU440274 lncRNA upstream 324821 6891766 ~ 6901343 (-) True G371634
XM_034300341.1 mRNA downstream 63236 6468517 ~ 6500613 (-) True LOC113537739
XM_034300340.1 mRNA downstream 63236 6469390 ~ 6500613 (-) False LOC113537739
XM_026931662.2 mRNA downstream 102298 6451575 ~ 6461551 (-) True dusp27
XM_034300160.1 mRNA downstream 113930 6432009 ~ 6449919 (-) False LOC113537523
XM_026931834.2 mRNA upstream 39655 6606600 ~ 6610907 (-) False LOC113537384
XM_026931835.2 mRNA upstream 39655 6606600 ~ 6610907 (-) True LOC113537384
XM_026931710.2 mRNA upstream 74119 6641064 ~ 6660087 (-) True LOC113537292
XM_026932035.2 mRNA upstream 93840 6660785 ~ 6666073 (-) True hikeshi
XM_034299930.1 mRNA upstream 101278 6668223 ~ 6675921 (-) True eed
XR_004577329.1 other downstream 200646 6358639 ~ 6363203 (-) False LOC113537742
XR_004577328.1 other downstream 530456 6019687 ~ 6033393 (-) False tpp2
XR_003403780.2 other downstream 611536 5942429 ~ 5952313 (-) False LOC113537623
XR_004577339.1 other downstream 1016817 5534472 ~ 5547032 (-) False LOC113537235
XR_004577289.1 other upstream 491890 7058835 ~ 7068467 (-) False LOC113537271
TU440391 other upstream 491890 7058835 ~ 7068531 (-) True LOC113537271
TU440780 other upstream 1151318 7718263 ~ 7724795 (-) True G372086
TU440974 other upstream 1345521 7912466 ~ 7916321 (-) False fam155a
TU441267 other upstream 1754039 8320984 ~ 8329026 (-) False timmdc1

Expression Profile