RNA id: XR_004577289.1


Basic Information

Item Value
RNA id XR_004577289.1
length 1738
RNA type misc_RNA
GC content 0.39
exon number 5
gene id LOC113537271
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 7058835 ~ 7068531 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAGTGTATAATCCAGGTATAGAGCTGCAGAGCCTACTGAGAGCCACAAGCCGCACACACCGAGACCACCTCAAAACGCAGAGGTTAAGGCAAGCTGGAGCAAACAGCTTTTCTAATCCAATCAGAGGGACGTACTGTAATGACATTAGCAAAGTCAAATTCTGCACTGATCTACACTTCATATGAATATTCAGTAACATGAATATTATTTCGCAAAATCGCATTTTCTTGCTTTTGCgcatttccagcatttttgtggcCGTTACGCACACAAGGCCTTGCGCTTGCTTTTCCCAAATGTCTTGAGACCTAGTATAGTTAATGCAGCCTGCTTCATAATTGAAACcgatttcttttatttatagacttgttttattttattttttaataggtTTGATAGACTTACAGGGTATGGATATTTAGTTTAAGGTATCAGTGTTTGCGGTGTGACTCTAAACTCATCAGTGCGCACAGCAAAAGGTGCAGGTTTCTCGGTCACGCCTCTTCTTATATTCACAcgcaagggggaaaaaagctaaaaCGCTCAGATATTAGCTCAAGGGCAACGTGTACACGTTAGGGAAAAAATGCTCCAAAGCGTGTACTATGGCCAGATTGGCCAACAGGATGTAGAAAGGTTATTGGGGAAATATGGGAAGGATGGAAGCTTTCTCCTGAGAGACAGCCAAAGTGAGCGCGGAGCTTTATGCCTCTGTGTCAGgaaAACTCCATTTGTCCACACATACAGGATTGTCCATTCACCTCAAGGCTGGGCAGTGGAGACTGAAAACAAGGAGAAGATACAGTGGTTCCAGTCACTGGATAAACTCATCGAATCCTACAAAGAAACCCCCCATAACATGGTTCCCCTACTGTATCCTCTTGAAAAATCACATCTAAATGAAGAGGAGAGACAGATTAGAGCAGAATCGGCCTACATGGaaatgtgaaaatctcaggTGATCCACTGAGAGGGAGTGTGCCTGTCTGGTGTATTTATATCTTCAAGTGACCCTACTGGCCTTTTGTTATTCAAGGCCGTGAAAACattccacaagatggcagtggAGCTGCTAAAGTTTGTGTGATTGACAGCATGCTTTCACTTCTGACTTCCCCTAAAGTTCAGAAGAAACTTTGTAAATTCAAGGCACCCTCCCAATACATGAAACCAAGTCTGTGTGATGGATTCTGTGCTCAAGAAATTTCCAGTCAAAACTGTTTAGCCTGTGTGCTGGATTCAGGAAATTCCTGTGAATAACTGTGAAAATAGTGTGTAAACTGCAGATAAGGTCAAACAAAGACATGTTTCTTCCATTTATTAATCGCAATGTTTTACTACCTGGCCTATATCTAGTGGCCCTTCATTCTTCTCTACGCTTTGCTAGGATGTGTTGTTCAGTTTTTATACAAAGTGAGTTGTTTTAAATGCATGAAAAAGTGATGATCTGCACAAAGTATCTTTACTAAAGATAAGGTTTTGATAAAATacaggtcattttttttaatgataaaccTGACTGGAAGGAAAATACCAAATATTTTGACAATATGTTTGACAAGAATGTTCAATAATTAATGTGccaaaaatgtgcaaattgcACTTGTCAGGAGAAATGACAACAATTACTACTTATTATCTGTATTGTTTAAACAGTGCATGTTAATTAACTAAGTTCTGATAAATGTATTTCTTACATTGCCTAAAGCATGCAAATAaactcatattttttttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU440274 lncRNA downstream 157492 6891766 ~ 6901343 (-) True G371634
TU440265 lncRNA downstream 177055 6879870 ~ 6881780 (-) True G371625
TU440266 lncRNA downstream 184415 6870572 ~ 6874420 (-) True pspc1
TU440272 lncRNA downstream 190875 6867744 ~ 6867960 (-) True G371632
TU440232 lncRNA downstream 243764 6808493 ~ 6815071 (-) True G371595
TU440449 lncRNA upstream 82971 7151438 ~ 7153159 (-) True G371787
TU440456 lncRNA upstream 114709 7183176 ~ 7183386 (-) True G371793
TU440604 lncRNA upstream 288844 7357311 ~ 7378538 (-) False LOC113537388
TU440608 lncRNA upstream 342514 7410981 ~ 7415018 (-) True G371929
TU440643 lncRNA upstream 399322 7467789 ~ 7468460 (-) True G371964
XM_026932381.2 mRNA downstream 33829 6958020 ~ 7025006 (-) True LOC113537750
XM_026932383.2 mRNA downstream 35075 6958020 ~ 7023760 (-) False LOC113537750
XM_026932382.2 mRNA downstream 73450 6958020 ~ 6985385 (-) False LOC113537750
XM_026932255.2 mRNA downstream 148289 6870566 ~ 6910546 (-) False pspc1
XM_026932254.2 mRNA downstream 148425 6884037 ~ 6910410 (-) False pspc1
XM_026932089.2 mRNA upstream 711 7069178 ~ 7082854 (-) False si:ch211-91p5.3
XM_026932088.2 mRNA upstream 711 7069178 ~ 7082854 (-) False si:ch211-91p5.3
XM_026932087.2 mRNA upstream 711 7069178 ~ 7082854 (-) True si:ch211-91p5.3
XM_026932060.2 mRNA upstream 16459 7084926 ~ 7090530 (-) True LOC113537541
XM_026932363.2 mRNA upstream 24335 7092802 ~ 7096706 (-) True pcdh8
XR_004577329.1 other downstream 695632 6358639 ~ 6363203 (-) False LOC113537742
XR_004577328.1 other downstream 1025442 6019687 ~ 6033393 (-) False tpp2
XR_003403780.2 other downstream 1106522 5942429 ~ 5952313 (-) False LOC113537623
XR_004577339.1 other downstream 1511803 5534472 ~ 5547032 (-) False LOC113537235
XR_004577340.1 other downstream 1511803 5536781 ~ 5547032 (-) False LOC113537235
TU440780 other upstream 649796 7718263 ~ 7724795 (-) True G372086
TU440974 other upstream 843999 7912466 ~ 7916321 (-) False fam155a
TU441267 other upstream 1252517 8320984 ~ 8329026 (-) False timmdc1
TU441284 other upstream 1361144 8429611 ~ 8432424 (-) False LOC113537606
XR_004577317.1 other upstream 1522940 8591407 ~ 8606840 (-) True tsga10

Expression Profile