RNA id: TU440604


Basic Information

Item Value
RNA id TU440604
length 1934
lncRNA type sense_over
GC content 0.33
exon number 2
gene id LOC113537388
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 7357271 ~ 7478509 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aatatttaaaaattctaaaaccttctgttttttttccaattttaagtcaaaaaaaaaaaaaaagcACGATAATGTCTGTAAAATAGAATTAGGACCTCGAAttgattacattatattacatcaaTTGTTTGATTATAAATCACAACTTTCACAATAGCAAACTCACTAGAATTCACTAATGTGAAAACGCCTGGTCCATCGTTCAGTGTGATGGAGGAGAGAATGGGATTAGCAGTCgctgttgttttattattattttttaccgTTCCATTCATATTTAATCTAACAAAATCTAAACCACTCATACTAATCAGAATTCCTATGAATTCCACAGACCAACATTTACCTCTGGAAACCTTAGCACCATTACATGTCATCCGTGTGAAATTCATTTGCTACTCCgtatatttacacatatttcaGCCAGGATGAAAACCTGAGCTGCTTTTAAATTCCCtactcatttttttccctttagatctttcattatttttctgtgtgtacAGTCTTTTATCAGTCAATATTAAAGCACACTGTCcattactgtatattgtgaGCAAGTGCAGTTTCTTGGTAGAGTGAAATgagcattatttatttgtattgatCCATTTTGCACATTGTACTGTCATCACACCTCTTTTTCCCCTTTGGACCTTACAAACATTGTTGATGCTCAGCAGATAAAGCTAAACAGAACAAAGTAGTATCCAGATAGAGACATACTTACTTAAATCACCCGTGTTTGCACACAAAatcccaaagaaaaaaaaagttagcatgGGTTAGGATAACAGCTTCAAAAATTTAAACCAGTTACTTCGATCAGCTCAACACAGCTCCCCTTTTGATGCTAAACATCATTCTTATTACCTTACATAAATTTTCCCTACAGTCTCATGATTGGCAACTCAGATGCAGATAATCATAGCATTTCTTatcattttgttcatatttagaTTTGAGTTAAGCACAATGGTGTTCAGATCTCAGACGTAACCACGAAGTTAAGTGCTATTCGGAGAGTTGCGCACGATTTGCCTAAAACAGTCATGCCACGTTTATACACAATTCCGAccttattttcattttccttgCGCAATATCAGCTGTAAGAATCAGGCAACTTCATAAACTACACGCATGTAATTTTAATTATCAGCATGTGGAGCCCAGAAAATCAGCTTAAGCAGCTtcataacccgactctgaatatgagtCATTTCCACCATGTAGAAATAGAGTATAGATTGACATAACATTTAGATTTAAGTCACCATCTCTGAATCTGGTCTATGAATTGTTTCTATAAATCTAGCCTATGAATTGATCTTAGTACTAACACGCACCTCTCTGTCAgatttcataatttttctttccatttaatTTCATAAGTTATTTAATTCAAAGTCTACTTACCTTTTAATTTTCATTGTTCTGGACAAATTTACCAGCAAATATTGCATTCTAGGCTTctacatatatattttctaaTCCGTTTGGGCGAAACAGTTGTTGCTATTTGAGAGAAAAGGTTCCAAAGATGCTGCCAAGTGTTTTGAAGGTAGACTTTacaccatatttttatttttttcacaagaTAAATGCAAATTCAGAATTTTAGTCACCACACTTTGCCTTTGTACAACAGAGCTATCATGCTGATTTGATTTGTGAGCTTTACTAATAGTATTGTCATTATGGGAGAAAtcttaatttgtgtttttaaaattggtAAGTAATTATGTCATGATTTTGTAATCCATGACCCAAATATAAGgtatatgttattatttcaaTATTAGGATTGTAATAAGGAATCATTTGTACTTCACGCAGAAAATGCTTTTTGTATGGTCGGACATTTGCTGTGAAGCTTGCTTTGGtattttatgtactttttttatttgtctttttcatttttgtttttttttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU440456 lncRNA downstream 173925 7183176 ~ 7183386 (-) True G371793
TU440449 lncRNA downstream 204152 7151438 ~ 7153159 (-) True G371787
TU440274 lncRNA downstream 455968 6891766 ~ 6901343 (-) True G371634
TU440265 lncRNA downstream 475531 6879870 ~ 6881780 (-) True G371625
TU440266 lncRNA downstream 482891 6870572 ~ 6874420 (-) True pspc1
TU440608 lncRNA upstream 32443 7410981 ~ 7415018 (-) True G371929
TU440643 lncRNA upstream 89251 7467789 ~ 7468460 (-) True G371964
TU440646 lncRNA upstream 97365 7475903 ~ 7476105 (-) True G371967
TU440605 lncRNA upstream 99342 7477880 ~ 7478230 (-) False LOC113537388
TU440719 lncRNA upstream 205726 7584264 ~ 7584503 (-) True G372034
XM_026932157.2 mRNA downstream 54747 7253751 ~ 7302564 (-) False mid1
XM_026932159.2 mRNA downstream 54748 7253751 ~ 7302563 (-) False mid1
XM_026932158.2 mRNA downstream 70514 7253751 ~ 7286797 (-) False mid1
XM_026932156.2 mRNA downstream 70514 7253751 ~ 7286797 (-) False mid1
XM_034300334.1 mRNA downstream 72832 7253751 ~ 7284479 (-) False mid1
XM_026931620.2 mRNA upstream 533672 7912210 ~ 7993096 (-) True fam155a
XM_026932396.2 mRNA upstream 627834 8006372 ~ 8010233 (-) True lig4
XM_026931738.2 mRNA upstream 663947 8042485 ~ 8054545 (-) True irs2a
XM_026931731.2 mRNA upstream 683683 8062221 ~ 8066451 (-) True LOC113537312
XM_026931658.2 mRNA upstream 690864 8069402 ~ 8084485 (-) True cars2
TU440391 other downstream 288780 7058835 ~ 7068531 (-) True LOC113537271
XR_004577289.1 other downstream 288844 7058835 ~ 7068467 (-) False LOC113537271
XR_004577329.1 other downstream 994108 6358639 ~ 6363203 (-) False LOC113537742
XR_004577328.1 other downstream 1323918 6019687 ~ 6033393 (-) False tpp2
XR_003403780.2 other downstream 1404998 5942429 ~ 5952313 (-) False LOC113537623
TU440780 other upstream 339725 7718263 ~ 7724795 (-) True G372086
TU440974 other upstream 533928 7912466 ~ 7916321 (-) False fam155a
TU441267 other upstream 942446 8320984 ~ 8329026 (-) False timmdc1
TU441284 other upstream 1051073 8429611 ~ 8432424 (-) False LOC113537606
XR_004577317.1 other upstream 1212869 8591407 ~ 8606840 (-) True tsga10

Expression Profile