RNA id: TU440605


Basic Information

Item Value
RNA id TU440605
length 351
lncRNA type sense_over
GC content 0.59
exon number 1
gene id LOC113537388
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 7357271 ~ 7478509 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCTCCACTGCCAGCGCGCACTTCTCTGCCCCTTCCATAAACACGCAGCCTAAGTCTATTAGGGCAGGATTTGAGTTAAAGAAGCGATGTAGCGCGGATTAACGGATCTTATCCTGGTCGACGCCATGGCGAGCGCGTGAGGTTTTGGCGCGTGTCCTGTGAGGGAAGTGAGAACCGCGACCATGGCGTCGGCGCAAGGGCTTCTCCACAGCGTCTTCTCCTGCTCGTCCCCGGCTTCCAGGGGCATCACCAAGCGGCGACTGCGCCAAACCCGGAGTTTAGACCCGGCTATAATCCGAAACTGCGACGCTGACTCTGATTTAACGCGAGCTGAGCTTGAGAGCGCCAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU440646 lncRNA downstream 1775 7475903 ~ 7476105 (-) True G371967
TU440643 lncRNA downstream 9420 7467789 ~ 7468460 (-) True G371964
TU440608 lncRNA downstream 62862 7410981 ~ 7415018 (-) True G371929
TU440604 lncRNA downstream 99342 7357311 ~ 7378538 (-) False LOC113537388
TU440456 lncRNA downstream 294494 7183176 ~ 7183386 (-) True G371793
TU440719 lncRNA upstream 106034 7584264 ~ 7584503 (-) True G372034
TU440722 lncRNA upstream 111584 7589814 ~ 7590030 (-) True G372037
TU440723 lncRNA upstream 115241 7593471 ~ 7593948 (-) True G372038
TU440803 lncRNA upstream 161943 7640173 ~ 7640386 (-) True G372108
TU440790 lncRNA upstream 204455 7682685 ~ 7704388 (-) True G372095
XM_026931842.2 mRNA downstream 56080 7357271 ~ 7421800 (-) False LOC113537388
XM_026932158.2 mRNA downstream 191083 7253751 ~ 7286797 (-) False mid1
XM_026931620.2 mRNA upstream 433980 7912210 ~ 7993096 (-) True fam155a
XM_026932396.2 mRNA upstream 528142 8006372 ~ 8010233 (-) True lig4
XM_026931738.2 mRNA upstream 564255 8042485 ~ 8054545 (-) True irs2a
XM_026931731.2 mRNA upstream 583991 8062221 ~ 8066451 (-) True LOC113537312
XM_026931658.2 mRNA upstream 591172 8069402 ~ 8084485 (-) True cars2
TU440391 other downstream 409349 7058835 ~ 7068531 (-) True LOC113537271
XR_004577289.1 other downstream 409413 7058835 ~ 7068467 (-) False LOC113537271
XR_004577329.1 other downstream 1114677 6358639 ~ 6363203 (-) False LOC113537742
XR_004577328.1 other downstream 1444487 6019687 ~ 6033393 (-) False tpp2
XR_003403780.2 other downstream 1525567 5942429 ~ 5952313 (-) False LOC113537623
TU440780 other upstream 240033 7718263 ~ 7724795 (-) True G372086
TU440974 other upstream 434236 7912466 ~ 7916321 (-) False fam155a
TU441267 other upstream 842754 8320984 ~ 8329026 (-) False timmdc1
TU441284 other upstream 951381 8429611 ~ 8432424 (-) False LOC113537606
XR_004577317.1 other upstream 1113177 8591407 ~ 8606840 (-) True tsga10

Expression Profile