RNA id: XM_026931841.2


Basic Information

Item Value
RNA id XM_026931841.2
length 6705
RNA type mRNA
GC content 0.44
exon number 13
gene id LOC113537388
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 7357271 ~ 7478509 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACACAACTGCGTAGTTCAGGGCCTTGTTCACTTGCAgcgctgggatttgaactcacgaccttctaATCAGAAgaccaacgtcttaaccactgagctaccactaccCCTCAGAATGgtaataaagtttaatttaaaaagcaaacaagtTTTGAGGCGATTAGAAAAGTTTGTCCTGTAGTTACTTGAATGAAAGTGGGATTGTGGAGGGAGGGGAGAAGACAACAGGAGTTTCCAAACCCTTTTCTCCCTCCCAAACTCGACCAGTTGTCTCTGGAGGAAGCCTCCACTGCCAGCGCGCACTTCTCTGCCCCTTCCATAAACACGCAGCCTAAGTCTATTAGGGCAGGATTTGAGTTAAAGAAGCGATGTAGCGCGGATTAACGGATCTTATCCTGGTCGACGCCATGGCGAGCGCGTGAGGTTTTGGCGCGTGTCCTGTGAGGGAAGTGAGAACCGCGACCATGGCGTCGGCGCAAGGGCTTCTCCACAGCGTCTTCTCCTGCTCGTCCCCGGCTTCCAGGGGCATCACCAAGCGGCGACTGCGCCAAACCCGGAGTTTAGACCCGGCTATAATCCGAAACTGCGACGCTGACTCTGATTTAACGCGAGCTGAGCTTGAGAGCGCCAGGCTGTCCGAAGAGCCGGGTGCGTCCCAAATCACCACGCAGCCGCACTCCAAGCTCACGACGCTCAAATGGACGCATCAGCTGCTGTCGCCATCCCTCTCCACTCCCGCTACACCTCTCGACACCTCGCCGTCATCGAGCTTTCACTTCGACTATGACTTTAAAAGTGGGAAAAGGAACACGGCTTGGGATTTGCCCTTCCTCGCCAGTTCAGGCACTTCGGGCACCTTCTTCTCCCCTAGAAAGTGGCTTCAGAGGAAAGCGCAGCATACCACTGCTCACGAGTACGTCGTCTGGAGGTCTGAGGGTGATTTCACGTGGAATAGCCTGTCTGGGAGGAGTGTGCGTCTCAAACCGGTGCCCATTCAGAGCCTGTCTGAGCTGGAGAGAGCCAGACTACAGGAGGTTGCCTTCAACCGCCTGCACCAGGACTATGACCTGGGCTGCCAGATCACCATCCCTAAAGATTGCCAGAAGAGGAAGAAGTCACTACGGAGGAAGCTGGACTCCTTAGCCAAGGAAAAGAACAAAGACAAAGAAAACGCACCGCAGGCGTTTGGCATCTCCTTATCACAGGTGATCACTAATGACCGAACCCTGCGTCAGCGTCAAGAGGGTCAGAGGGAGGAGCAGAGGGACCCGAGTGACCTGGTGTCCTCCATCCTGCAGTTTGCCACACGACGACCTACCAAGGAGCTTTCCAGCAGCAACTCATCACTCAGCTCCACCTCGGAGACAGCAAACGAGTCCACGTCATCCAACACGCCTGAAGCAGCACCCCGTGCTCGCAGGAGGGGCGGCATGTCCGTGGACTCCATCACGGATTTGGACGACAACCAGTCACGTCTGCTGGAGGCGCTGCAGCTCTCGCTGCCGGCTGAGACAGCCAGCAAGAAGGAGAAGCAGCAGGACAAGAGGCTGAGTCTGAACCCCATCTACAGGCAGGTGCCACGTGTGCTGGACAGCTGCTGCCAGCACCTTGAGAAGTATGGTCTACAGACGGTGGGGATCTTTAGAGTGGGCAGCTCAAAGAAAAGAGTGAGGCAGCTGCGGGAGGAGTTTGACCGCGGTGTGGACGTGCAGCTGGACGAGGAACACAGTGTCCATGACGTGGCAGCGCTTTTGAAGGAATTCCTCCGGGACATGGCTGACCCACTGCTCACCAAAGAGCTCTACACAGCATTCATTAACACCACATTGCTGGACCCAGAAGACCAGCAGTTAGTCACCCAGCTGCTTGTATACCTGCTGCCGCCTTGTAACAGTGACACCCTGCAGCGGCTTTTGGAGTTTCTGCACATCGTGGCTCAGCATGCTCAAAATGGATATGACAAAGATGGACAGGAGGTTACAGGAAACAAGATGACATCAATCAACTTGGCCACCATCTTTGGGCCAAACCTGCTGCACAAGCAGAAGAGCTCAGATAAAGAGTTCAGTGTGCAGAGCTCGGCCCGGGCCGAGGAGTCCACGGCCGTCATCGCTGTGGTGCAAAGGATGATCGCCAGCTATGAGGAGCTTTTCATGGTGTCTGCAGACTTGCAGAACGAGGTGCTGATGAGCTTGCTGGAGACGGATCCTGACGTGGTGGACTACCTCTTACGACGCAAGGCCTCACAACGTCCCGATTTGTTGAATTCTGACGCATCACTCTCCCTGAGTGAGTGCAGATCGTCCAGCGACTCCAACAAGGCGTCCAGTGGTGAAGTCTCTCCCTATGACAACAACTCGCCTGTGCTGTCTGAGAGGAGAGGGGCAGACCTGGTGAAAGAGAGTGAAGTCCATTCTGGAAGAGTCCTCAGCACAGAGCGACTTTTCTGCGTCCCAGAACAGTACAGCCTGGTGGGACAAGTGACAGGACGCAGCAGAGACACTGTTTCAAATATCTGGTCCCCAACAAAGGAGGAGCATGCCAACATCTGGGGTGCGTGGCACACAACACTGAAGCCAGGACTGCAAGAACAAACCTATTCAGGTTCCTGTGGCAACATATCAGAGGCAAGCTTCCGCAGCTCCAGGGATGGAATCGATGATCGGACCCAACCCACTGTAAGCAGAGCGGATTTCGCACAAGACACCACAGTGACTCATGCGTGCCTCAACCTGAACCTTAAACCCAATGGTCAATTTAAATCCAGCAGCTCAGAGGACCTTCCAGTCAGCAGCAGCCACAGCACACCTAGCCCCACCCTTTACCCCAAGCCAACCAATAGGAATGAAGCAcgtcctcctccaccaccttaCAGACACTCAAGATTAACACCTTCAGTAGTTTCGTCCAATTCTGTCTTGTCACAGTCTCAGCAGCACCCCCAGCAGCTTGGGAAGACTGGCAACCAGAACTCATCCTCACCAGCGGGCACACTGATGCCCACAAGCTCAGAGTGGCAAGACtggcagagagacaggtggcACATCTGGCAGCTGCTGTCTTCAGACAATGCTGACACGCTACCCGAGACACTGGTGTGATGCCAAGTTAAGcaattcagtgtgtttatatacagaagCCACTGCcttatgtgtgttatgtacagACTGGTTTTGGGGCTAAGCTCCTGGTTATACTCTATAGGCAGTTGTGGCAGTAGGGTGGAGACGAGTTGCACTGTGGAAACCAAAAGAGGTGCAAGTATACCTCCAGCTGAGGAAGATTCCAGGCAGCAAACCACAGCTCACCAACTGACAGTGCAATTGGTATGGGATTTGGTCCATTCCAAAAAAATGAAGTCCTCCCTCACATTTGCTTGCTAGATCCATTTGGAAACCCAGTGTTGGGATTCGTCGCAGTGGGTCAGAGCCCTTTCCTCACTTTCTGTCTTTAGCTCCACTTGGGAAGCCAGCATTACAGGCTCTAAACCAAGTACCTTAAATTCCCAAACAAACCTAAAGCTAAACTGTCAGATCATTGACACTTTTATACGGACAAATTGAAAAATACACTATACTCAAACTATTGCATAACTGCTGTGTATTTCTGCTTacagtttttttcctttttttaaaaaaaaaacaacaattgtTCAATTTTTGCACTGAATCATATGACATGAGGTAAAACTTACCTTTACAGGCTCAGCTCCTTTTTGTATATACACCATAAGGATATTGCCAAAAAGCTGCTAAATCAAATGTATACAAAATTATTTGTTCTTACCTCCAGCACAATAAGGATACCAGAACAGTGAAATGccattttgtattaattaaggACATGTAAGCCTTTGAATGAATAACGCATGAGTGGGATTCTGTAGCATTTCAAAACGGCCATTAACATTTGGGCCACATGTTCCTCTCTGGCCCAAATGCTACAATAATGTCTAATTAGTGCGCTTACTAAAACATCACATCTCAAATGTGAGAACACGTAGAACCCATTCTAACAAGATTTGTTGAACTgttttcccataatgcactgcaagaGTACGACAGTTTTAATGGCAAGTTTACAAACATCTGCTTGGAACAgctgtgtaattaaaaaaaataaagcataaacgtattttttatattttaaatctaaattcGTTTAACCCCTCACCCCCCGTCCCTTTGTCCTCTGCCTTAGTAGTGTGTGTTGACTTATACGCTAACCGTTAATTATCCGACTGCCACACaggctgttagctagctactgaACAGTCTCCAATGATGCAACGTTATGACTTTGTCCTTTCTAGCAACGTGTTTTCTATGTACACTGTCCCAAACTAAATCATCTTTTAAGTTTCTGCAACAACTGTTACTATCTAGAAGAAATTCTCTAAGAATTCTTCAGTCAAATGCTTGCATTTGGTATCCACCTTTTATTTCCACAGCACTTAAAAGAGGTACGTGTTCCTCAGatagatttgtttttaaacattctaAAAAAACGACAATCTGCTTCTCTGGAATGAATTGTGCCTTTGCTATTACAAACCTGCCTAAGAGcagaaatacattttgcaaATTCAGCAGTATGTTTGAATACTAGTCATAAACCTTTACAGGTTGATTCCAGTTGCATCTCATGGCTCAGAAGGAGCAAAAGCTCTACACAATTTAGATATGCTTTGGTATCTCTTGCACCTTTACTCTTTTTTCACACTTCgttttaattaaattgttaCAAAATGGTGTCATGGTTCataatctcaaaaaaaaaaaaaaaaaaaagctaatagcACGATAATGTCTGTAAAATAGAATTAGGACCTCGAAttgattacattatattacatcaaTTGTTTGATTATAAATCACAACTTTCACAATAGCAAACTCACTAGAATTCACTAATGTGAAAACGCCTGGTCCATCGTTCAGTGTGATGGAGGAGAGAATGGGATTAGCAGTCgctgttgttttattattattttttaccgTTCCATTCATATTTAATCTAACAAAATCTAAACCACTCATACTAATCAGAATTCCTATGAATTCCACAGACCAACATTTACCTCTGGAAACCTTAGCACCATTACATGTCATCCGTGTGAAATTCATTTGCTACTCCgtatatttacacatatttcaGCCAGGATGAAAACCTGAGCTGCTTTTAAATTCCCtactcatttttttccctttagatctttcattatttttctgtgtgtacAGTCTTTTATCAGTCAATATTAAAGCACACTGTCcattactgtatattgtgaGCAAGTGCAGTTTCTTGGTAGAGTGAAATgagcattatttatttgtattgatCCATTTTGCACATTGTACTGTCATCACACCTCTTTTTCCCCTTTGGACCTTACAAACATTGTTGATGCTCAGCAGATAAAGCTAAACAGAACAAAGTAGTATCCAGATAGAGACATACTTACTTAAATCACCCGTGTTTGCACACAAAatcccaaagaaaaaaaaagttagcatgGGTTAGGATAACAGCTTCAAAAATTTAAACCAGTTACTTCGATCAGCTCAACACAGCTCCCCTTTTGATGCTAAACATCATTCTTATTACCTTACATAAATTTTCCCTACAGTCTCATGATTGGCAACTCAGATGCAGATAATCATAGCATTTCTTatcattttgttcatatttagaTTTGAGTTAAGCACAATGGTGTTCAGATCTCAGACGTAACCACGAAGTTAAGTGCTATTCGGAGAGTTGCGCACGATTTGCCTAAAACAGTCATGCCACGTTTATACACAATTCCGAccttattttcattttccttgCGCAATATCAGCTGTAAGAATCAGGCAACTTCATAAACTACACGCATGTAATTTTAATTATCAGCATGTGGAGCCCAGAAAATCAGCTTAAGCAGCTtcataacccgactctgaatatgagtCATTTCCACCATGTAGAAATAGAGTATAGATTGACATAACATTTAGATTTAAGTCACCATCTCTGAATCTGGTCTATGAATTGTTTCTATAAATCTAGCCTATGAATTGATCTTAGTACTAACACGCACCTCTCTGTCAgatttcataatttttctttccatttaatTTCATAAGTTATTTAATTCAAAGTCTACTTACCTTTTAATTTTCATTGTTCTGGACAAATTTACCAGCAAATATTGCATTCTAGGCTTctacatatatattttctaaTCCGTTTGGGCGAAACAGTTGTTGCTATTTGAGAGAAAAGGTTCCAAAGATGCTGCCAAGTGTTTTGAAGGTAGACTTTacaccatatttttatttttttcacaagaTAAATGCAAATTCAGAATTTTAGTCACCACACTTTGCCTTTGTACAACAGAGCTATCATGCTGATTTGATTTGTGAGCTTTACTAATAGTATTGTCATTATGGGAGAAAtcttaatttgtgtttttaaaattggtAAGTAATTATGTCATGATTTTGTAATCCATGACCCAAATATAAGgtatatgttattatttcaaTATTAGGATTGTAATAAGGAATCATTTGTACTTCACGCAGAAAATGCTTTTTGTATGGTCGGACATTTGCTGTGAAGCTTGCTTTGGtattttatgtactttttttatttgtctttttcatttttgtttttttttcagcaagtCTCATAAAGAATAAATGAGAAAGCAAGTTTTGA

Function

GO: NA

KEGG:

id description
K20631 ARHGAP6; Rho GTPase-activating protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU440456 lncRNA downstream 173885 7183176 ~ 7183386 (-) True G371793
TU440449 lncRNA downstream 204112 7151438 ~ 7153159 (-) True G371787
TU440274 lncRNA downstream 455928 6891766 ~ 6901343 (-) True G371634
TU440265 lncRNA downstream 475491 6879870 ~ 6881780 (-) True G371625
TU440266 lncRNA downstream 482851 6870572 ~ 6874420 (-) True pspc1
TU440719 lncRNA upstream 105755 7584264 ~ 7584503 (-) True G372034
TU440722 lncRNA upstream 111305 7589814 ~ 7590030 (-) True G372037
TU440723 lncRNA upstream 114962 7593471 ~ 7593948 (-) True G372038
TU440803 lncRNA upstream 161664 7640173 ~ 7640386 (-) True G372108
TU440790 lncRNA upstream 204176 7682685 ~ 7704388 (-) True G372095
XM_026932157.2 mRNA downstream 54707 7253751 ~ 7302564 (-) False mid1
XM_026932159.2 mRNA downstream 54708 7253751 ~ 7302563 (-) False mid1
XM_026932158.2 mRNA downstream 70474 7253751 ~ 7286797 (-) False mid1
XM_026932156.2 mRNA downstream 70474 7253751 ~ 7286797 (-) False mid1
XM_034300334.1 mRNA downstream 72792 7253751 ~ 7284479 (-) False mid1
XM_026931620.2 mRNA upstream 433701 7912210 ~ 7993096 (-) True fam155a
XM_026932396.2 mRNA upstream 527863 8006372 ~ 8010233 (-) True lig4
XM_026931738.2 mRNA upstream 563976 8042485 ~ 8054545 (-) True irs2a
XM_026931731.2 mRNA upstream 583712 8062221 ~ 8066451 (-) True LOC113537312
XM_026931658.2 mRNA upstream 590893 8069402 ~ 8084485 (-) True cars2
TU440391 other downstream 288740 7058835 ~ 7068531 (-) True LOC113537271
XR_004577289.1 other downstream 288804 7058835 ~ 7068467 (-) False LOC113537271
XR_004577329.1 other downstream 994068 6358639 ~ 6363203 (-) False LOC113537742
XR_004577328.1 other downstream 1323878 6019687 ~ 6033393 (-) False tpp2
XR_003403780.2 other downstream 1404958 5942429 ~ 5952313 (-) False LOC113537623
TU440780 other upstream 239754 7718263 ~ 7724795 (-) True G372086
TU440974 other upstream 433957 7912466 ~ 7916321 (-) False fam155a
TU441267 other upstream 842475 8320984 ~ 8329026 (-) False timmdc1
TU441284 other upstream 951102 8429611 ~ 8432424 (-) False LOC113537606
XR_004577317.1 other upstream 1112898 8591407 ~ 8606840 (-) True tsga10

Expression Profile