RNA id: XM_026931842.2


Basic Information

Item Value
RNA id XM_026931842.2
length 6328
RNA type mRNA
GC content 0.43
exon number 13
gene id LOC113537388
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 7357271 ~ 7478509 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTTCCTTTGCTCTGAGGAACTTCAGCTCTGCATCTGAGCAACTTCAGCTCTGCATCTGAGTAACTTCAGCCCTGCATCTGAGGAACTTCAGCCCTGCATCTGAGGAACATCAGATCTGCATCTGAGCAACTTCAGCCCTGCATCTGAGCAACTTCAGATGTGCATCTCAGGAATTTCAGCTCAGCATTGCCGGAGTGAAGATTAACACTCAAGACAAGTGCAAGCAAACCTGGacttcttctttccttcctcttctttttttttttctactgaaagctgaaattcaaaCATGGATGAGCGACTCCAACCTCGCTTCTGCTCCTTGTCGGTTCCTTGACGTGCGCGCGCCCAGGCTTTTGACGCACCTGAGCGTTTATCAGAAACTCATCTATTTTCATCTTTCATTCTGCATTGATGCCAAATCCGCGatcactccactgatctcatCTCCACTGGAGTTTCATCCAGCtgattggtttttttttattataattctaTGTGGATTTTTAGACATGGGGGACTCGGTTTTCGTCGACAGACACATCTCATATCTCGGTGATTTCACGTGGAATAGCCTGTCTGGGAGGAGTGTGCGTCTCAAACCGGTGCCCATTCAGAGCCTGTCTGAGCTGGAGAGAGCCAGACTACAGGAGGTTGCCTTCAACCGCCTGCACCAGGACTATGACCTGGGCTGCCAGATCACCATCCCTAAAGATTGCCAGAAGAGGAAGAAGTCACTACGGAGGAAGCTGGACTCCTTAGCCAAGGAAAAGAACAAAGACAAAGAAAACGCACCGCAGGCGTTTGGCATCTCCTTATCACAGGTGATCACTAATGACCGAACCCTGCGTCAGCGTCAAGAGGGTCAGAGGGAGGAGCAGAGGGACCCGAGTGACCTGGTGTCCTCCATCCTGCAGTTTGCCACACGACGACCTACCAAGGAGCTTTCCAGCAGCAACTCATCACTCAGCTCCACCTCGGAGACAGCAAACGAGTCCACGTCATCCAACACGCCTGAAGCAGCACCCCGTGCTCGCAGGAGGGGCGGCATGTCCGTGGACTCCATCACGGATTTGGACGACAACCAGTCACGTCTGCTGGAGGCGCTGCAGCTCTCGCTGCCGGCTGAGACAGCCAGCAAGAAGGAGAAGCAGCAGGACAAGAGGCTGAGTCTGAACCCCATCTACAGGCAGGTGCCACGTGTGCTGGACAGCTGCTGCCAGCACCTTGAGAAGTATGGTCTACAGACGGTGGGGATCTTTAGAGTGGGCAGCTCAAAGAAAAGAGTGAGGCAGCTGCGGGAGGAGTTTGACCGCGGTGTGGACGTGCAGCTGGACGAGGAACACAGTGTCCATGACGTGGCAGCGCTTTTGAAGGAATTCCTCCGGGACATGGCTGACCCACTGCTCACCAAAGAGCTCTACACAGCATTCATTAACACCACATTGCTGGACCCAGAAGACCAGCAGTTAGTCACCCAGCTGCTTGTATACCTGCTGCCGCCTTGTAACAGTGACACCCTGCAGCGGCTTTTGGAGTTTCTGCACATCGTGGCTCAGCATGCTCAAAATGGATATGACAAAGATGGACAGGAGGTTACAGGAAACAAGATGACATCAATCAACTTGGCCACCATCTTTGGGCCAAACCTGCTGCACAAGCAGAAGAGCTCAGATAAAGAGTTCAGTGTGCAGAGCTCGGCCCGGGCCGAGGAGTCCACGGCCGTCATCGCTGTGGTGCAAAGGATGATCGCCAGCTATGAGGAGCTTTTCATGGTGTCTGCAGACTTGCAGAACGAGGTGCTGATGAGCTTGCTGGAGACGGATCCTGACGTGGTGGACTACCTCTTACGACGCAAGGCCTCACAACGTCCCGATTTGTTGAATTCTGACGCATCACTCTCCCTGAGTGAGTGCAGATCGTCCAGCGACTCCAACAAGGCGTCCAGTGGTGAAGTCTCTCCCTATGACAACAACTCGCCTGTGCTGTCTGAGAGGAGAGGGGCAGACCTGGTGAAAGAGAGTGAAGTCCATTCTGGAAGAGTCCTCAGCACAGAGCGACTTTTCTGCGTCCCAGAACAGTACAGCCTGGTGGGACAAGTGACAGGACGCAGCAGAGACACTGTTTCAAATATCTGGTCCCCAACAAAGGAGGAGCATGCCAACATCTGGGGTGCGTGGCACACAACACTGAAGCCAGGACTGCAAGAACAAACCTATTCAGGTTCCTGTGGCAACATATCAGAGGCAAGCTTCCGCAGCTCCAGGGATGGAATCGATGATCGGACCCAACCCACTGTAAGCAGAGCGGATTTCGCACAAGACACCACAGTGACTCATGCGTGCCTCAACCTGAACCTTAAACCCAATGGTCAATTTAAATCCAGCAGCTCAGAGGACCTTCCAGTCAGCAGCAGCCACAGCACACCTAGCCCCACCCTTTACCCCAAGCCAACCAATAGGAATGAAGCAcgtcctcctccaccaccttaCAGACACTCAAGATTAACACCTTCAGTAGTTTCGTCCAATTCTGTCTTGTCACAGTCTCAGCAGCACCCCCAGCAGCTTGGGAAGACTGGCAACCAGAACTCATCCTCACCAGCGGGCACACTGATGCCCACAAGCTCAGAGTGGCAAGACtggcagagagacaggtggcACATCTGGCAGCTGCTGTCTTCAGACAATGCTGACACGCTACCCGAGACACTGGTGTGATGCCAAGTTAAGcaattcagtgtgtttatatacagaagCCACTGCcttatgtgtgttatgtacagACTGGTTTTGGGGCTAAGCTCCTGGTTATACTCTATAGGCAGTTGTGGCAGTAGGGTGGAGACGAGTTGCACTGTGGAAACCAAAAGAGGTGCAAGTATACCTCCAGCTGAGGAAGATTCCAGGCAGCAAACCACAGCTCACCAACTGACAGTGCAATTGGTATGGGATTTGGTCCATTCCAAAAAAATGAAGTCCTCCCTCACATTTGCTTGCTAGATCCATTTGGAAACCCAGTGTTGGGATTCGTCGCAGTGGGTCAGAGCCCTTTCCTCACTTTCTGTCTTTAGCTCCACTTGGGAAGCCAGCATTACAGGCTCTAAACCAAGTACCTTAAATTCCCAAACAAACCTAAAGCTAAACTGTCAGATCATTGACACTTTTATACGGACAAATTGAAAAATACACTATACTCAAACTATTGCATAACTGCTGTGTATTTCTGCTTacagtttttttcctttttttaaaaaaaaaacaacaattgtTCAATTTTTGCACTGAATCATATGACATGAGGTAAAACTTACCTTTACAGGCTCAGCTCCTTTTTGTATATACACCATAAGGATATTGCCAAAAAGCTGCTAAATCAAATGTATACAAAATTATTTGTTCTTACCTCCAGCACAATAAGGATACCAGAACAGTGAAATGccattttgtattaattaaggACATGTAAGCCTTTGAATGAATAACGCATGAGTGGGATTCTGTAGCATTTCAAAACGGCCATTAACATTTGGGCCACATGTTCCTCTCTGGCCCAAATGCTACAATAATGTCTAATTAGTGCGCTTACTAAAACATCACATCTCAAATGTGAGAACACGTAGAACCCATTCTAACAAGATTTGTTGAACTgttttcccataatgcactgcaagaGTACGACAGTTTTAATGGCAAGTTTACAAACATCTGCTTGGAACAgctgtgtaattaaaaaaaataaagcataaacgtattttttatattttaaatctaaattcGTTTAACCCCTCACCCCCCGTCCCTTTGTCCTCTGCCTTAGTAGTGTGTGTTGACTTATACGCTAACCGTTAATTATCCGACTGCCACACaggctgttagctagctactgaACAGTCTCCAATGATGCAACGTTATGACTTTGTCCTTTCTAGCAACGTGTTTTCTATGTACACTGTCCCAAACTAAATCATCTTTTAAGTTTCTGCAACAACTGTTACTATCTAGAAGAAATTCTCTAAGAATTCTTCAGTCAAATGCTTGCATTTGGTATCCACCTTTTATTTCCACAGCACTTAAAAGAGGTACGTGTTCCTCAGatagatttgtttttaaacattctaAAAAAACGACAATCTGCTTCTCTGGAATGAATTGTGCCTTTGCTATTACAAACCTGCCTAAGAGcagaaatacattttgcaaATTCAGCAGTATGTTTGAATACTAGTCATAAACCTTTACAGGTTGATTCCAGTTGCATCTCATGGCTCAGAAGGAGCAAAAGCTCTACACAATTTAGATATGCTTTGGTATCTCTTGCACCTTTACTCTTTTTTCACACTTCgttttaattaaattgttaCAAAATGGTGTCATGGTTCataatctcaaaaaaaaaaaaaaaaaaaagctaatagcACGATAATGTCTGTAAAATAGAATTAGGACCTCGAAttgattacattatattacatcaaTTGTTTGATTATAAATCACAACTTTCACAATAGCAAACTCACTAGAATTCACTAATGTGAAAACGCCTGGTCCATCGTTCAGTGTGATGGAGGAGAGAATGGGATTAGCAGTCgctgttgttttattattattttttaccgTTCCATTCATATTTAATCTAACAAAATCTAAACCACTCATACTAATCAGAATTCCTATGAATTCCACAGACCAACATTTACCTCTGGAAACCTTAGCACCATTACATGTCATCCGTGTGAAATTCATTTGCTACTCCgtatatttacacatatttcaGCCAGGATGAAAACCTGAGCTGCTTTTAAATTCCCtactcatttttttccctttagatctttcattatttttctgtgtgtacAGTCTTTTATCAGTCAATATTAAAGCACACTGTCcattactgtatattgtgaGCAAGTGCAGTTTCTTGGTAGAGTGAAATgagcattatttatttgtattgatCCATTTTGCACATTGTACTGTCATCACACCTCTTTTTCCCCTTTGGACCTTACAAACATTGTTGATGCTCAGCAGATAAAGCTAAACAGAACAAAGTAGTATCCAGATAGAGACATACTTACTTAAATCACCCGTGTTTGCACACAAAatcccaaagaaaaaaaaagttagcatgGGTTAGGATAACAGCTTCAAAAATTTAAACCAGTTACTTCGATCAGCTCAACACAGCTCCCCTTTTGATGCTAAACATCATTCTTATTACCTTACATAAATTTTCCCTACAGTCTCATGATTGGCAACTCAGATGCAGATAATCATAGCATTTCTTatcattttgttcatatttagaTTTGAGTTAAGCACAATGGTGTTCAGATCTCAGACGTAACCACGAAGTTAAGTGCTATTCGGAGAGTTGCGCACGATTTGCCTAAAACAGTCATGCCACGTTTATACACAATTCCGAccttattttcattttccttgCGCAATATCAGCTGTAAGAATCAGGCAACTTCATAAACTACACGCATGTAATTTTAATTATCAGCATGTGGAGCCCAGAAAATCAGCTTAAGCAGCTtcataacccgactctgaatatgagtCATTTCCACCATGTAGAAATAGAGTATAGATTGACATAACATTTAGATTTAAGTCACCATCTCTGAATCTGGTCTATGAATTGTTTCTATAAATCTAGCCTATGAATTGATCTTAGTACTAACACGCACCTCTCTGTCAgatttcataatttttctttccatttaatTTCATAAGTTATTTAATTCAAAGTCTACTTACCTTTTAATTTTCATTGTTCTGGACAAATTTACCAGCAAATATTGCATTCTAGGCTTctacatatatattttctaaTCCGTTTGGGCGAAACAGTTGTTGCTATTTGAGAGAAAAGGTTCCAAAGATGCTGCCAAGTGTTTTGAAGGTAGACTTTacaccatatttttatttttttcacaagaTAAATGCAAATTCAGAATTTTAGTCACCACACTTTGCCTTTGTACAACAGAGCTATCATGCTGATTTGATTTGTGAGCTTTACTAATAGTATTGTCATTATGGGAGAAAtcttaatttgtgtttttaaaattggtAAGTAATTATGTCATGATTTTGTAATCCATGACCCAAATATAAGgtatatgttattatttcaaTATTAGGATTGTAATAAGGAATCATTTGTACTTCACGCAGAAAATGCTTTTTGTATGGTCGGACATTTGCTGTGAAGCTTGCTTTGGtattttatgtactttttttatttgtctttttcatttttgtttttttttcagcaagtCTCATAAAGAATAAATGAGAAAGCAAGTTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU440456 lncRNA downstream 173885 7183176 ~ 7183386 (-) True G371793
TU440449 lncRNA downstream 204112 7151438 ~ 7153159 (-) True G371787
TU440274 lncRNA downstream 455928 6891766 ~ 6901343 (-) True G371634
TU440265 lncRNA downstream 475491 6879870 ~ 6881780 (-) True G371625
TU440266 lncRNA downstream 482851 6870572 ~ 6874420 (-) True pspc1
TU440643 lncRNA upstream 45989 7467789 ~ 7468460 (-) True G371964
TU440646 lncRNA upstream 54103 7475903 ~ 7476105 (-) True G371967
TU440605 lncRNA upstream 56080 7477880 ~ 7478230 (-) False LOC113537388
TU440719 lncRNA upstream 162464 7584264 ~ 7584503 (-) True G372034
TU440722 lncRNA upstream 168014 7589814 ~ 7590030 (-) True G372037
XM_026932157.2 mRNA downstream 54707 7253751 ~ 7302564 (-) False mid1
XM_026932159.2 mRNA downstream 54708 7253751 ~ 7302563 (-) False mid1
XM_026932158.2 mRNA downstream 70474 7253751 ~ 7286797 (-) False mid1
XM_026932156.2 mRNA downstream 70474 7253751 ~ 7286797 (-) False mid1
XM_034300334.1 mRNA downstream 72792 7253751 ~ 7284479 (-) False mid1
XM_026931620.2 mRNA upstream 490410 7912210 ~ 7993096 (-) True fam155a
XM_026932396.2 mRNA upstream 584572 8006372 ~ 8010233 (-) True lig4
XM_026931738.2 mRNA upstream 620685 8042485 ~ 8054545 (-) True irs2a
XM_026931731.2 mRNA upstream 640421 8062221 ~ 8066451 (-) True LOC113537312
XM_026931658.2 mRNA upstream 647602 8069402 ~ 8084485 (-) True cars2
TU440391 other downstream 288740 7058835 ~ 7068531 (-) True LOC113537271
XR_004577289.1 other downstream 288804 7058835 ~ 7068467 (-) False LOC113537271
XR_004577329.1 other downstream 994068 6358639 ~ 6363203 (-) False LOC113537742
XR_004577328.1 other downstream 1323878 6019687 ~ 6033393 (-) False tpp2
XR_003403780.2 other downstream 1404958 5942429 ~ 5952313 (-) False LOC113537623
TU440780 other upstream 296463 7718263 ~ 7724795 (-) True G372086
TU440974 other upstream 490666 7912466 ~ 7916321 (-) False fam155a
TU441267 other upstream 899184 8320984 ~ 8329026 (-) False timmdc1
TU441284 other upstream 1007811 8429611 ~ 8432424 (-) False LOC113537606
XR_004577317.1 other upstream 1169607 8591407 ~ 8606840 (-) True tsga10

Expression Profile