RNA id: TU440780


Basic Information

Item Value
RNA id TU440780
length 3669
RNA type TUCP
GC content 0.42
exon number 3
gene id G372086
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 7718263 ~ 7724795 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGGTTCCATGGGCTTGTGCATGCTTGAGGACTCGGATGAGGAGTTCCCGTTAGAATAGGGCTCAGATGAACGAGGAGGAACTGGCGGCTGCTTGGGTGGAGCTGTCTGAGGCGAGCCCTGATGGTTCTTACGGTATCTTTCATCAGCCTGGCACAAAGGACACAAATTGCGGAGATTAACTGGTGGGCATGAGGGACACCTCAAAGAGAACTGACAATTGTTCCAAGCCAGGAAACTGCATGCTGGTGTACAACTCAGCAAGCTCAAGTAAGAGAGggacaaaacagacaaaactgtGTTAGGACATTGCTGCTCTGGCTTATATTCAAGCCAACATGAATTTCatgctcataaaaaaaaaaaaaccttcactaCACTTTTCTAAATATTAAGACAACCAAAGACAAGAGTTTTTCCTAAGGACTAGGATCATAGCCAAACCATGacatgcaaaacaaacacaaggaaaaagaagaaggaagcaTTTGAAAATCTGGTATCACCCTGAGAACAATAACTAATAATTACCAATGACCAGTGTGggtcaagtttaaaaaaaatttaaacactgagctaTATTATACGTCTTTCAATtcaaattatgtaaaatataaaatataaaaatatgggTTTAGTTTACACAAGAAAGCAAGACAAGATTTAAAAGGAGACAGGATGTAGTTTTTCATTCTCGTTCATGACTATGGTGGTGAGCAATATGGTTTTCTTtctgaaaagctgaaaagcAAGGCTTAatccaatttttaaaaaggattGTGTAACTGATACACAGAGTCTTCCACTGACATGGTGAACAGACTGGCTCCGGGAGCCGGGATGTAATCTTAACATtctacaaattttttttttgtgtgcaaaaATAGAGCTTGGTGTGCGTTGATGAGCGGAACACCGTTTTTTACAAAGtggtcaataaaaaaaatcaataaaataaagatcaataaaaggtttttattaaatatatagcaCTTAAAACATTAAGTCTATATTCACTGATGAATATAGGTCTCATCttccaaaatgcaaaatatacatattttgaTACTCTTTGATAAAGCGTAATTAACGTCGGATTTGAGGATTATGAGGATTTGACTTTTGAAAGTAAAATATGGAAGGCAAAACTATCCAGTCTTTTATGTCTCCAGTGTTTTGGATTGTAAACTGTCACCTTATCAGTGGAAAAAGGGTGTGGGAGTACCATGGTAATATTGTACTTGATCACTATCAAACGTAATTTGCACTCTAACAATGAAGCAAAATGTGATGTGGtggataatgataatgatgctGAATATGTGCTTTAAAAGATCAGTATCCAAAGAAAACCAAATTTCTGCTGCTCCCACCAGCACACTGTTACCTGACTGCCAATAAGTTAAATGTTCTTCACATGCAAAACTGAGCCGAGGTTAGCTCGAGAAGCCAGAGTAGCAGCAGGCAACAGTGGGTGGACTAAGGGGATGGCTTTTCACCTCTCCGACTGGCTGGGCTTCAGACACCGGGCCACTGGTTGGAGTTGACTGGACGGGGGGGTCGTCagtcctgtctgtctcacccacTGGCTGTGTGACTAAAGGGCTGGAGTCCACTGACACACTTTCAGTCTGTTCCCTGCACTCATCAGTAAGGGCTTCTTTCCCATCTACATGTTTATTCTGCTCTGCATCAGGATTTACACTTTGGTCACTGTCAGTCTGATGTGGAAGGTCAGCATTTGGCGTGCCCTCATCTGCGTTAGAGTTAACTGGGGGATCAGGGGCGTCTAAGGGGCGTGCTTGGGGTAGTTTTGCCCAGTCGGGCTGGGCTGTGAGGGAGGAAGTGCGCTGTTTGGGCCCGTGCTGCAGGGAGAGCAGGTAGGCCTGCTCCTGCTGGAGCTGCCGCTGCAGCCGCTCCGCCTTCCGCTGCTCCTCCAGCTCCCGCCATTTGAACTCCTGAGCACAGAGCGTAGCTCCATGAAAAAGCTCCACAATTATTGAGTAAATTTCCATGCGTTTTAACACATTACATGTGTTTGTACATACTGCCACTAAAATATGTTGTTTAGTAATTATACTCAGTATGGTATGTAATATTAAATTAGCATTCTGTAGCTGATGCAAATATTATACTCATGCTCTAgagccatggttctcaaagagGGGTCTGTAAAGCTAATACAGACTAATTTTGTTAGATTTAGCAAGTTTATTATGTCTATAAAAAGGTTGGATGGTTAAGGAAAAACACAGTGGCTTTAATAGACAGCCAAAATAttaattcacacatttaaataatataaatataaaatgatttatttataaaataaatctgtactgatggGACTGtgaatttattgtattttattttatttattattattgctatttttttttttttttaacagttaaagaGCTCCCTGACTGTAAatagtttgagaacccctgctctaGAGCATGTGGTCCTAGATGCTGATAATCTAAATGACCgtgattaaaaatgtctttagtTCTGACGATTAAAATTACACTGGTCTCTAAGATGAGATACAATGGTGAGAAAATTTATTTCAGGCAGCAACCTTACACCACAACACTTTTCCAAACACCACGTCGCCTTACATGCTTCTAACCAGCAGCtctaaaataaacactgtattactgtatttgtttattcactGATGTGTATGTGATGGATGGAAATGGGAAGAAATGAGAAAAggtcaacaaaaaaaaccctgagagaGAAGCATTTAACTTTGTTTGTGGCAGTCCCATATTAACTCATTTCCACTTTCTCCCCCTGAGACACTGTGCAGGCTGTTTACAACATAAACAGCTCCCCGCAAAGACAAGAACAATGACTTTGGCCTAACCACGGGAGAGAGAGGAATAGTAGGAAATCCCCTCTCTTCCTGCTGGGCATTTCCTGCGGTCGTGTCATGAGACTATGCTTATATAAATATACGGCTGGACAGATTGAACCTTCTCCCTCTGGGAGCGTGCTGTATACTGATGATACGCGACACCATTAGAAACGTTAGTGAATCTTTGATCTTGCGATGATCTCAAATCATCCCATTTTAGCTTAATAGAACAGGCCAGAAATAACACTGAGCTCCAgacaaaattaaacacaaacagtagACTCTGTTGTAAGGCTTCAGACTTTACTAAGAGGACATGAGAAGGAAAAGGCAGAATTCCTACCAGTAACATGGCCTGCTCGTGAAGCAGCTGCTGCTGAAGGATCTCTAGATGCCTCTGCTCCTCTTCCAGCTGACGGCGGATATATTCCTGTTCACGATCGTTTCgtcttttctcctcctctgccCTCCTGCGCTCATCCTCCTCTTTGCGCCGGCGCTCCATCTCCTCTAttctccttttctcctcctgctcccGCCGCCTCTGCTCACGCTCCTGCTGCCTTCTCAACTCTCGCTCACGCCGTTGTTGCTCCTCCAGACGTCTCCTTTGCTCCTTCTGCTGCTCTATGCGTTTCTGGCGCTCAGCCAGCAGTTGCCGCTTGTACTCCTCCTGCTCGCGGAGCTGCTGTTCTTGAAGAAGCTGCTGTCTCTTCAGGGCCTCCGAGCGCTCCTTGTTTTCCTGCTGCAGCCGGATGAAGTCTCGCCGCAGCGTCGACTCGCCAGGTACGTTCACTATAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU440790 lncRNA downstream 13875 7682685 ~ 7704388 (-) True G372095
TU440803 lncRNA downstream 77877 7640173 ~ 7640386 (-) True G372108
TU440723 lncRNA downstream 124315 7593471 ~ 7593948 (-) True G372038
TU440722 lncRNA downstream 128233 7589814 ~ 7590030 (-) True G372037
TU440719 lncRNA downstream 133760 7584264 ~ 7584503 (-) True G372034
TU440779 lncRNA upstream 5915 7730710 ~ 7731108 (-) True G372085
TU440830 lncRNA upstream 55267 7780062 ~ 7781205 (-) True G372132
TU440867 lncRNA upstream 184329 7909124 ~ 7909552 (-) True G372168
TU441002 lncRNA upstream 251982 7976777 ~ 7976991 (-) True G372288
TU441014 lncRNA upstream 264155 7988950 ~ 7989198 (-) True G372300
XM_026931841.2 mRNA downstream 239754 7357271 ~ 7478509 (-) True LOC113537388
XM_026931842.2 mRNA downstream 296463 7357271 ~ 7421800 (-) False LOC113537388
XM_026932157.2 mRNA downstream 415699 7253751 ~ 7302564 (-) False mid1
XM_026932159.2 mRNA downstream 415700 7253751 ~ 7302563 (-) False mid1
XM_026932158.2 mRNA downstream 431466 7253751 ~ 7286797 (-) False mid1
XM_026931620.2 mRNA upstream 187415 7912210 ~ 7993096 (-) True fam155a
XM_026932396.2 mRNA upstream 281577 8006372 ~ 8010233 (-) True lig4
XM_026931738.2 mRNA upstream 317690 8042485 ~ 8054545 (-) True irs2a
XM_026931731.2 mRNA upstream 337426 8062221 ~ 8066451 (-) True LOC113537312
XM_026931658.2 mRNA upstream 344607 8069402 ~ 8084485 (-) True cars2
TU440391 other downstream 649732 7058835 ~ 7068531 (-) True LOC113537271
XR_004577289.1 other downstream 649796 7058835 ~ 7068467 (-) False LOC113537271
XR_004577329.1 other downstream 1355060 6358639 ~ 6363203 (-) False LOC113537742
XR_004577328.1 other downstream 1684870 6019687 ~ 6033393 (-) False tpp2
XR_003403780.2 other downstream 1765950 5942429 ~ 5952313 (-) False LOC113537623
TU440974 other upstream 187671 7912466 ~ 7916321 (-) False fam155a
TU441267 other upstream 596189 8320984 ~ 8329026 (-) False timmdc1
TU441284 other upstream 704816 8429611 ~ 8432424 (-) False LOC113537606
XR_004577317.1 other upstream 866612 8591407 ~ 8606840 (-) True tsga10
TU442201 other upstream 2154048 9878843 ~ 9918740 (-) True LOC117596103

Expression Profile