RNA id: TU440790


Basic Information

Item Value
RNA id TU440790
length 2592
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G372095
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 7682685 ~ 7704388 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCTGCCACAGGAACATTTGGTTTGGTCTGGTGAAAAACTTCACTAGGACTACGGTCCACCAGTTGATCACCCTTGATTTAGAGAAATaccattaaaagaaaataaactgagTTCTGAGTGATTGACTTAGCGTTCAAAAATGAGGCACCATTACAGCAATACAATGACTAGTCACTAATTTCAGCATTAAAAATATGCAAGTccagtttaattaaaaagttcAAACCCCGACTTCATGGAGAAATAAATCTTGGCTAATTCTCTATAGCTATTAGTGCTGTAACAGGATCTTGAATCACTCCATCCAGAGAAGAAAACAGCAAACACATTTTACAAACACACTGCTAAAACCATTGTCCAGTTTCTCAAACTCCTGCCTGACTGGGACTGCAGCCAACAGAAAGCTGTGCAGATAAAAGCTGGATTGTGAGCTCATTGTTTTCTGGAATCCTGCAGGGTTTTCGTGTCGAGTCACTCAAGCTTTACCAAGCTGTAAAACTAGTACCAGATGAGATTATATCACTCAATGTGCAAGAAAGACTGCTAGGGAAACACTTGGAAATACATTTCACTAACTGTCAAGTGATGGAACGTGTCTTTAATGGTGTAGACAGGAAATCAACTCAACTCTAAAGAGGAAAGAAATAATCAGtggcaaaagaaagaaagagtttgCCCTTTCACATCTACTCTAGTGCTATACATGTACTCAGCCtgcttctgcatttttttccattatcgGAACACGTGCTTCCGGCAGGTCCCTTTGTGAattgactcagtgtgtgtgcctGTCCATCTAGATAAAGACGGAGGCCTCTTCAGTGCCTTGGGTAAAACTTTAACAAGTATGGTTTATCTGGACGGCTCATTAGGATCCCAGGCACCAGCAGTTTAACCTCCAGGCCAGTCTCCATGTGACCCATCTCACTGCCCTTACGATTTTTTAGTGCAACTATGATAATCAAGGTCTGGCGGATTAGTTTGGGGGTTTCTCAAATATAGAGTTTATAGCCAGAACTGAGTTTCTGAATCTACTTAGAATAATATTACACTTTCTCCCAGTGTATGGTGCAGAAATACacatcagcctattttttttttaaatcataaatgttCAGAAAAGTGTCCCGGGTTTGAATCTTGGTAACGCCAAAATCATCCatggagccaagggagcaaaattagCCGTGTTCTCCGAGTGGGAGGGAAAGCgtattctctctcccctgtcaatcacagcgacactagccaatcattaACATCTGTGGGtttatgtatgtggaagagggcagacagtgCTTTCCTCAGGGTGTTACGCTATCTTGTGACACACAGCATGAGCGGcaatttgaaaagatgtggttggctggttTTGTGTCTCTCGGAGGTAGCACGTGTTGGCCTTCACCctgcccagttggtagctgACGTATGATAGGGGAGCTAGCTGatagagctggctggtgggtgggaattggcaggggACCAAGTTGCGGAGAAAATGGGATGGGGGGGCAGGAAATCATACAAGTTGGCACTTCTGCAAGATTTAGGATGTTGCTGATTAGTCAATTAGTTCCTCTACTGGCTGAATCAGTGCTTATAAGTAAAAGAAAGGAACCGATCTGTCATGCTGTCTTTTCAGTGATTTTCATCTCACTTGTGTGCAGAAGTTTACATCCCCATGGTTTCTGGGTGAAAATCTTTTGTTACATGTAAAACTGAAGGAACGTGTGAAACCTGACACACTGAAAGTCTTGTTGGTGTGAactttgtcttcattttgtcttatagatatacaaacttttgcattcagcATTACAGTATGGCTCCAAGCCTGCAATAGTAActtaacactttaaaaaaaaagccacgaTGAAACTATGCtataaaagaaaaaggacaaaaatgcaTTCGATTTACTGCAATTGTACGTGAAATTCAATCCCTCAACCTCTGTGAAGAGATTATTCCAAAAGCGACtgtttaactgaaaaataatgtttcGGTCCATGTGTGGTGCTAATACTGGGGTGGCGTCTCGGTGCTTTCATTTCAAACACACTCTTTCCTTCTCTGTGTGAAAAGAGAAGCAGTCTAAACAGCCCACAGAAAGCCAAACAAAACCACCTTTGTAATAAAGCAGTTAGGGCTCTTAGCGACACAACGACAGCTGCTGCCTTCAGCATTAGACCCGGCCTGCTCATTCGTCACTCTGCTAAACAAGACAAGCAAACTGGCCAATCAGAGGGCTCGATACAAAAGAAGAGCGATTGTACATGCAGCACACATACTGTTGAggaggaggggggaaaaaaaagacaagacattTAGTTGGGGCAGGCCACATGGCAGTGTATCAAAGGTTTGAATATTCAACGGAGAGTAAGCAAAAGAGCGCCATTGAGCAAAATGTTACTGAGGAAACACCGAGCACATTATGAGCTGACCGCATCTCCTCATGGAATAAATATGCACGCTAAAGCCTTTCATAAAACATCCAGCCTATATAACCCTCATCTCTGCCTACGTCAGACAAATACAATTTGATTTTGTTCTGTATACTTGTGTATTGTGCACTAGCAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU440803 lncRNA downstream 42299 7640173 ~ 7640386 (-) True G372108
TU440723 lncRNA downstream 88737 7593471 ~ 7593948 (-) True G372038
TU440722 lncRNA downstream 92655 7589814 ~ 7590030 (-) True G372037
TU440719 lncRNA downstream 98182 7584264 ~ 7584503 (-) True G372034
TU440605 lncRNA downstream 204455 7477880 ~ 7478230 (-) False LOC113537388
TU440779 lncRNA upstream 26322 7730710 ~ 7731108 (-) True G372085
TU440830 lncRNA upstream 75674 7780062 ~ 7781205 (-) True G372132
TU440867 lncRNA upstream 204736 7909124 ~ 7909552 (-) True G372168
TU441002 lncRNA upstream 272389 7976777 ~ 7976991 (-) True G372288
TU441014 lncRNA upstream 284562 7988950 ~ 7989198 (-) True G372300
XM_026931841.2 mRNA downstream 204176 7357271 ~ 7478509 (-) True LOC113537388
XM_026931842.2 mRNA downstream 260885 7357271 ~ 7421800 (-) False LOC113537388
XM_026932158.2 mRNA downstream 395888 7253751 ~ 7286797 (-) False mid1
XM_026931620.2 mRNA upstream 207822 7912210 ~ 7993096 (-) True fam155a
XM_026932396.2 mRNA upstream 301984 8006372 ~ 8010233 (-) True lig4
XM_026931738.2 mRNA upstream 338097 8042485 ~ 8054545 (-) True irs2a
XM_026931731.2 mRNA upstream 357833 8062221 ~ 8066451 (-) True LOC113537312
XM_026931658.2 mRNA upstream 365014 8069402 ~ 8084485 (-) True cars2
TU440391 other downstream 614154 7058835 ~ 7068531 (-) True LOC113537271
XR_004577289.1 other downstream 614218 7058835 ~ 7068467 (-) False LOC113537271
XR_004577329.1 other downstream 1319482 6358639 ~ 6363203 (-) False LOC113537742
XR_004577328.1 other downstream 1649292 6019687 ~ 6033393 (-) False tpp2
XR_003403780.2 other downstream 1730372 5942429 ~ 5952313 (-) False LOC113537623
TU440780 other upstream 13875 7718263 ~ 7724795 (-) True G372086
TU440974 other upstream 208078 7912466 ~ 7916321 (-) False fam155a
TU441267 other upstream 616596 8320984 ~ 8329026 (-) False timmdc1
TU441284 other upstream 725223 8429611 ~ 8432424 (-) False LOC113537606
XR_004577317.1 other upstream 887019 8591407 ~ 8606840 (-) True tsga10

Expression Profile