RNA id: TU440867


Basic Information

Item Value
RNA id TU440867
length 429
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G372168
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 7909124 ~ 7909552 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttcatttcgattttatttatatagcacttttagcaatggacattgtcataaagcagctttacagaaataaatacatgctggatataaattgtaaatgtatgaatttatccctaatgagcaagccagaggtgatggtggcaaggaaaaactccctgagatgatatgaggaagaaaccttgagaggaaccagactcaaaagggaaccaatcctcatctgggtgataacagatagtgtgattataaataaatcccttctataactgtgtactatatggacaaatagtgcaattgtgtaagcAGGAcattgattacagttttcacatgaagtccagtttgttgaacctatccattgtccactgatggagatccgagtgcaaaactgcttgcggcaactgcagccccaaagccaccacagcaatcgcagtccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU440830 lncRNA downstream 127919 7780062 ~ 7781205 (-) True G372132
TU440779 lncRNA downstream 178016 7730710 ~ 7731108 (-) True G372085
TU440790 lncRNA downstream 204736 7682685 ~ 7704388 (-) True G372095
TU440803 lncRNA downstream 268738 7640173 ~ 7640386 (-) True G372108
TU440723 lncRNA downstream 315176 7593471 ~ 7593948 (-) True G372038
TU441002 lncRNA upstream 67225 7976777 ~ 7976991 (-) True G372288
TU441014 lncRNA upstream 79398 7988950 ~ 7989198 (-) True G372300
TU441021 lncRNA upstream 106553 8016105 ~ 8016388 (-) True G372307
TU441040 lncRNA upstream 173411 8082963 ~ 8084539 (-) False cars2
TU441219 lncRNA upstream 293216 8202768 ~ 8204224 (-) True G372471
XM_026931841.2 mRNA downstream 430615 7357271 ~ 7478509 (-) True LOC113537388
XM_026931842.2 mRNA downstream 487324 7357271 ~ 7421800 (-) False LOC113537388
XM_026932158.2 mRNA downstream 622327 7253751 ~ 7286797 (-) False mid1
XM_026931620.2 mRNA upstream 2658 7912210 ~ 7993096 (-) True fam155a
XM_026932396.2 mRNA upstream 96820 8006372 ~ 8010233 (-) True lig4
XM_026931738.2 mRNA upstream 132933 8042485 ~ 8054545 (-) True irs2a
XM_026931731.2 mRNA upstream 152669 8062221 ~ 8066451 (-) True LOC113537312
XM_026931658.2 mRNA upstream 159850 8069402 ~ 8084485 (-) True cars2
TU440780 other downstream 184329 7718263 ~ 7724795 (-) True G372086
TU440391 other downstream 840593 7058835 ~ 7068531 (-) True LOC113537271
XR_004577289.1 other downstream 840657 7058835 ~ 7068467 (-) False LOC113537271
XR_004577329.1 other downstream 1545921 6358639 ~ 6363203 (-) False LOC113537742
XR_004577328.1 other downstream 1875731 6019687 ~ 6033393 (-) False tpp2
TU440974 other upstream 2914 7912466 ~ 7916321 (-) False fam155a
TU441267 other upstream 411432 8320984 ~ 8329026 (-) False timmdc1
TU441284 other upstream 520059 8429611 ~ 8432424 (-) False LOC113537606
XR_004577317.1 other upstream 681855 8591407 ~ 8606840 (-) True tsga10
TU442201 other upstream 1969291 9878843 ~ 9918740 (-) True LOC117596103

Expression Profile