RNA id: TU440974


Basic Information

Item Value
RNA id TU440974
length 3856
RNA type TUCP
GC content 0.40
exon number 1
gene id fam155a
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 7912210 ~ 7993096 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATGTTCGCACAGCACATTCAAAAGGACTCATCCCTCACGCCAGCATACGTCTGCCACGACCTCGGCGGCTCCGAGGCTGAATCAAGGCAGACTGAAGCTCTGCTTGCTAGTCCTGGTCCTCTTGCACACGGTAGCGACCATGACAGCTGTCCAGAACTCCACCTGCCTAGCCACCATCTTCCCACTGGAGGACAATGCCCCCAGAGAAGAGTGACTGGATGTGGGGGGCTATCTCTAGCCAATCAGCATGCTCCAAAAAGTGAAAGATGGCCAGCAAGGAACTGGGCCGAACCGAGTCGAACCAAGCACGCCAGGCACGCCGGCAGATCCCTAGCTGCGCTTTACATGTTCAGTGCTCTTTATGCCCCAGGTAGAAGGAATGACAGAATTCATGAGAAGGGCAAGAAGAGACAAAGGAAGAGGAAGACCAAGACTGTGTCCTTTTGAGACGTCAGCTCTCACACTGTTCTGaaaagtatatattttgttttttgttgtatcAGATGATGGTCAGACTTTTTCCCTTTTTAGCTTCTGCTGTCAAAATGGGTTTCTGTGTATGTCAACCACTTCAGATTAAAATGGAATGAGGGAAGAAAGCAAAGTTATATGTATCCATGTCTCAGTCAAACCACTCTGTCATACTctattattttcacatttgacaGCTAGCATGAATAGAAGTATACATGCTGTTGCTGTAGCTAGAACGATACGAACAGTAGGCTGGTTGTGGATCCAAATACTCTTACTACCTGTAACCTCCATTCTTCATTTACCAGATTCAGATACGTTAGGTTCTTGCTTTGCAATCAAGATGTAGACAGGTCCATGTCAACAGAGCCTTAAAAACAGACCCCCATAGCAATCATACGGTGTATCATACCATTCCCCATTTTTAGTGTTCAGCCTCTATATATCCTCAGATCTGCAGTGCTGTTTAGCAGACTACATTATAACCCTGTTGTTATCCTGACACCTACTGGGACAGCTGATATCTTTTTACTGTGCAgtgaaaatgtgaatgtgtggtgATACACCACCATAATTTTCTCAAATATGGAAGGAAACCAGCGTGGAAGCCAAGAATGAGGACCTGGTAGAACCCACATTTCAAGGAATTAAATCATCCACTTATACTTTGTGTGAATAAGCTAATGGTTCTTTAGTATTCCATCCAAAGAGGCTGTCTCAAAACAGTTGTTTTATTgactatactctatactcttcCAGTATAGGTAAATCTTAACCTCACCAGGCTGCAATAACATGACTGGAGTGCCTGGTCTAGCCTAAAAATGCATACAAATGGAACAGCAGCCACTCCATCGAAACATCAAGTTTTATTTAGAATGTGGTTGTTAAATGACCTCCAGTAGCTTTCTTTGGGTGGTGCACAGATGGCTCAGAATGATATCATGTTTTGACAATTTTATCAATGGTTGTTCTTATTTCCACACTCTTATGCCCTCAATATGGTAACTTACACTGCTAATGAGCTGCTGAAAAAGAATGAGTTGCATAGTGATCAGTTGTAATTGCGCTGtaatttttttgcctttgttttgttCTCAAAATGTCCTACACTGTTGTGTAAAGGGCTTAGCGGATAGCATGGAAGGGAAGGAGTTCTCAAGGGCTCATTCTATAAATCTCCTTCTGTGTGtaggactgtgtgtgtttggtgtctgaCTGTATGGGCCTCTGGCTGCTGATATACTGTTTTGCGACCTGTTTTACTTGGTGTTACATCATTAACCTATGTTAAAAGACGTACTTTTTGCTTAACATTTACTGTGTCTTTGTAATTGGCTGGAGAATATCATGGGCACATTTGTCTCGCATAGTTACGTCTAATAATAATGTTGCAACGTCCCTCAATCTGAAAGGCCCAAGTGCCTCCACTGTCCATTTGTCTAGTGCTATTTCTTCAACACAGCAGTATATAGAGGAACGGCAGCAGTTACAGTTGATTAACAGTGTTTCCCACACATAGGTGATGCTTGGGTGTGGCCCCGAGGTATACTGATGAGAGCCCAAGTACATTTTGggccataaaaaaaatcacactttatttataatacatttcgAGAAAACAACTCATCTTGTTTTCAATTTGGCTTTGACACGCACACAACTCGGGAGAGAAAAGAACCAGACAGAGCTGGTAAAGCACATTCATTTCATCTTTATTGATTTTGACGTCAGTTTGTGCAAGTTCATGGTATACACTTAGTCTGTCAGAATAGCTCCTAATATTTGCACAGTCTCATTTTCTGCACATTTTGGTTGCATCTGGTGGCACTTTGCCTGGTTCCCATTTATTGGGCATATAACATTTCTGGCTCCCTATTTAACCACTCAGAACAAACCACTTTAATGTATTGTCAAGTGACAGAATacaacaaatatacagtatacaggtaaTTCAATATAGGATACAGGTAattcacttgattttttttgttcctaaTGATATGTggcaacaccttgaacactcTTTCAGCCACCTCACTCTGTTTCTAATGATAGAACAATTAGCCTGGAGCTATGCTCACGCTCCTCTTTATCAGAAACTAACAACATCGATTAAAAAAGTTATTAACACCTTAGCAGTTTTGCTCTCTCGTTGGTTTTTACTCTTGCATGATTTCATGCTATAATACGGGTATATTTAGAATTTCACATAGAAATGTCATGGTTGAGAGacttgtatgtatatatttcagtttGCACCCACAGCTATGCCGACTCTGCTCTGTGTTGTCGTACGACATACATGAAACTCGACCCAAGTAATCTGTGGGAAACACTGATTACACTACAGATGTAATAAAGGCCAGGCTAGAGCTGTATCATAGTTTTGTGATGATGGCTTTAATAAGTGAACTTAAAGACATGCTTTAACCCATAGTCTTGTTGTATGTCCTATTTGCTGTTTAAAGCAGCTGGCCAAGGTCTTACAGTTCAGAGGTGACAATCATTCCTCATTCCATTAATCATACACTTTAAATTATCGTAAAAAATGATCCAGCCTTATAAGCAAACAACAGGATTTGTGGATATTGGGGATGCCCTATAAATATGATATCCTttcttataataaaaatattgtaaggAAGgatattcaagaaaaaaatcttaaaagcTTTTGGCTTTGGGGTTTGCAGTATCCGACACTGCCGAGTTGCACACATCACCTTCTTTAAACAAGCTGTTTTACTCTGCCATTACATTTTACCCAGACAGCTTATATTATGCCTTGTGGTATCAACAACTTAGAAGTACATACTACAGTGTCTAGTGGAAGGAAGTCAGAGCAACCAGACTTATGTTTGTAATACTGACGTTTCTACAAGAATGCAAACCCTTCACAGCAGTTGTTGCCATTAGGTCTGTCAGACATTTTGATTTCTGATTAAAGGGTGACACATAGAAAGTCTCTAGAACTAGCCTCCATGTTGGTCCTGTTTACCTTATAAAAACACAAGGCAGATCCTACACAATCTGTGTAATATTGCCAGAATCACTTCAGATACATATTTAGCCTTTTCATCCCCTGTATGAACCACTGATCTTCAAAAATCCTGTTGATCTATGCAGATGTGCCTCTGTCATTATATTGTAGATTTGTGCTAATGTAAATTTGTGCTAATTTGTCTCACTGTTGCCTGTCTTTCTTTGAGATTTTGGTGTGTTTTTCCTCTCccacaatcttttttttctactctgTTGCCCTTTCATGGGTCACATGTCAGTTGTTTTTGCGCTGCATTTTCTTAGTCACGTCTCAAAAAGTGCGAGCTGCTTAAGTGAATGTTTTCCTCTTCTGGGCTGGGCAAATTGTGGTTCCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU440867 lncRNA downstream 2914 7909124 ~ 7909552 (-) True G372168
TU440830 lncRNA downstream 131261 7780062 ~ 7781205 (-) True G372132
TU440779 lncRNA downstream 181358 7730710 ~ 7731108 (-) True G372085
TU440790 lncRNA downstream 208078 7682685 ~ 7704388 (-) True G372095
TU440803 lncRNA downstream 272080 7640173 ~ 7640386 (-) True G372108
TU441002 lncRNA upstream 60456 7976777 ~ 7976991 (-) True G372288
TU441014 lncRNA upstream 72629 7988950 ~ 7989198 (-) True G372300
TU441021 lncRNA upstream 99784 8016105 ~ 8016388 (-) True G372307
TU441040 lncRNA upstream 166642 8082963 ~ 8084539 (-) False cars2
TU441219 lncRNA upstream 286447 8202768 ~ 8204224 (-) True G372471
XM_026931841.2 mRNA downstream 433957 7357271 ~ 7478509 (-) True LOC113537388
XM_026931842.2 mRNA downstream 490666 7357271 ~ 7421800 (-) False LOC113537388
XM_026932158.2 mRNA downstream 625669 7253751 ~ 7286797 (-) False mid1
XM_026932396.2 mRNA upstream 90051 8006372 ~ 8010233 (-) True lig4
XM_026931738.2 mRNA upstream 126164 8042485 ~ 8054545 (-) True irs2a
XM_026931731.2 mRNA upstream 145900 8062221 ~ 8066451 (-) True LOC113537312
XM_026931658.2 mRNA upstream 153081 8069402 ~ 8084485 (-) True cars2
XM_026931725.2 mRNA upstream 171459 8087780 ~ 8090097 (-) True LOC113537306
TU440780 other downstream 187671 7718263 ~ 7724795 (-) True G372086
TU440391 other downstream 843935 7058835 ~ 7068531 (-) True LOC113537271
XR_004577289.1 other downstream 843999 7058835 ~ 7068467 (-) False LOC113537271
XR_004577329.1 other downstream 1549263 6358639 ~ 6363203 (-) False LOC113537742
XR_004577328.1 other downstream 1879073 6019687 ~ 6033393 (-) False tpp2
TU441267 other upstream 404663 8320984 ~ 8329026 (-) False timmdc1
TU441284 other upstream 513290 8429611 ~ 8432424 (-) False LOC113537606
XR_004577317.1 other upstream 675086 8591407 ~ 8606840 (-) True tsga10
TU442201 other upstream 1962522 9878843 ~ 9918740 (-) True LOC117596103
TU442843 other upstream 2954963 10871284 ~ 10872546 (-) False lipt1

Expression Profile