RNA id: XM_026931620.2


Basic Information

Item Value
RNA id XM_026931620.2
length 5451
RNA type mRNA
GC content 0.45
exon number 3
gene id fam155a
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 7912210 ~ 7993096 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGACGTCGAGGGGGAAGAGGCCACCTCGTGCAGACGCGGAAGCGCCGGATCGAGTCCCTGCGCTTCCAGCCAGAAACCCCGGAACCGGAGCCAGCGGCCCGAGCGCACCGCGGCGGCTCTGCGCCAAGCGCGAGAGCGGAGCGCGTGACGAACAACGAAGAACGAGGAGACCATGTTGCTGCGCACGCGACcgcctcttcttcttcttctacttcttgtTCTTTCTCGCCCTCTCGAGCGGGCCTTCGACGATGCACGCAGTAATAATAATCCCATCGTCCCCCAAATGGACTAACTGATTATCGCAGATCATCGCGGAGGGAAGCCGCCGTTCAGTGTCACGGAGGGGAAGTGAAGGTATCGAAAGGGGGAAAAACGGACGCGCGAGGCGGACCTCAACGTCAAATGACCATAGTGGCAGAAAAGAAGCCGCCACGGTGGAGTCGGCCGGTGCTGCGCTTGTCCGAAATATGACCAGCGGCGCTCGCAAGCCTCGGCAGAGAGATGACGGCTTAACGCACCGGCTTGCACCGCGCGAGAACGAGCAGCAGTCCGCAGACTCCGAGCGGGCGCAGCGATGGCGGCTCTCCTTGGCGTCGCTCGTCGTCTTTGCCGCGCTGCTCTCTGACCGGCCGCGCTTCTGCGCCGAGGCCAAGCTCACCAAGAGCCGAGACGAGGAGCCGGCCAGGATCGCTCTAGACGCCATTTCCGTTGGAAACACTAGTCAACCGGAGTGGAGACTGGAAACGTGCCGCGCGGGCGGCGCGTCTAGGAGCTGCTTCACGTTCGCCGACGCGGACCACCTGTGTGCGGGCCTCTCGGGGTCAGACGTGAACCCGGGTGACTTGCACCTCTCGTTTTGCAACGCCTACTCGCTAATGGATTTGCTGTACGGCTTGACGAACCCGGACAACTTGAACTGCAGCGTGGATGCGCTCGCGAGCGGCGACCCGTCCAGGTGTAGCCTGTGCGTGCAGGCGTACCAGCGCTATGACCTGCACGCTCAGGAGAAATACGAGGAGTTCGAGAGCATGACCGAGCGCTACGAGACGGACGCGTACTCGGTGCGAACGTGCATGGATGAGTGTAAGGTGGTGTACAAGCCCTGGCTCTGCGCTCAATATTTCCAGAGCAATCAGTCCAGCTGTAGCCGCAAGATCCCATGTGAGCAGTACTGTCTTGAGGTCCAGCAGAGGTGTCCCTTCATATTGCCTGACAATGATGACCTTATACATGGTGGCACTCCCAGTTTTATATGTACAGGGCTTTTGGAGAATGCAGACAACACCAAGCATGAGCCACAGTGCTGTGATGTGCGGTGGGAGCTAAAATTCAATGAATGTTCGCACAGCACATTCAAAAGGACTCATCCCTCACGCCAGCATACGTCTGCCACGACCTCGGCGGCTCCGAGGCTGAATCAAGGCAGACTGAAGCTCTGCTTGCTAGTCCTGGTCCTCTTGCACACGGTAGCGACCATGACAGCTGTCCAGAACTCCACCTGCCTAGCCACCATCTTCCCACTGGAGGACAATGCCCCCAGAGAAGAGTGACTGGATGTGGGGGGCTATCTCTAGCCAATCAGCATGCTCCAAAAAGTGAAAGATGGCCAGCAAGGAACTGGGCCGAACCGAGTCGAACCAAGCACGCCAGGCACGCCGGCAGATCCCTAGCTGCGCTTTACATGTTCAGTGCTCTTTATGCCCCAGGTAGAAGGAATGACAGAATTCATGAGAAGGGCAAGAAGAGACAAAGGAAGAGGAAGACCAAGACTGTGTCCTTTTGAGACGTCAGCTCTCACACTGTTCTGaaaagtatatattttgttttttgttgtatcAGATGATGGTCAGACTTTTTCCCTTTTTAGCTTCTGCTGTCAAAATGGGTTTCTGTGTATGTCAACCACTTCAGATTAAAATGGAATGAGGGAAGAAAGCAAAGTTATATGTATCCATGTCTCAGTCAAACCACTCTGTCATACTctattattttcacatttgacaGCTAGCATGAATAGAAGTATACATGCTGTTGCTGTAGCTAGAACGATACGAACAGTAGGCTGGTTGTGGATCCAAATACTCTTACTACCTGTAACCTCCATTCTTCATTTACCAGATTCAGATACGTTAGGTTCTTGCTTTGCAATCAAGATGTAGACAGGTCCATGTCAACAGAGCCTTAAAAACAGACCCCCATAGCAATCATACGGTGTATCATACCATTCCCCATTTTTAGTGTTCAGCCTCTATATATCCTCAGATCTGCAGTGCTGTTTAGCAGACTACATTATAACCCTGTTGTTATCCTGACACCTACTGGGACAGCTGATATCTTTTTACTGTGCAgtgaaaatgtgaatgtgtggtgATACACCACCATAATTTTCTCAAATATGGAAGGAAACCAGCGTGGAAGCCAAGAATGAGGACCTGGTAGAACCCACATTTCAAGGAATTAAATCATCCACTTATACTTTGTGTGAATAAGCTAATGGTTCTTTAGTATTCCATCCAAAGAGGCTGTCTCAAAACAGTTGTTTTATTgactatactctatactcttcCAGTATAGGTAAATCTTAACCTCACCAGGCTGCAATAACATGACTGGAGTGCCTGGTCTAGCCTAAAAATGCATACAAATGGAACAGCAGCCACTCCATCGAAACATCAAGTTTTATTTAGAATGTGGTTGTTAAATGACCTCCAGTAGCTTTCTTTGGGTGGTGCACAGATGGCTCAGAATGATATCATGTTTTGACAATTTTATCAATGGTTGTTCTTATTTCCACACTCTTATGCCCTCAATATGGTAACTTACACTGCTAATGAGCTGCTGAAAAAGAATGAGTTGCATAGTGATCAGTTGTAATTGCGCTGtaatttttttgcctttgttttgttCTCAAAATGTCCTACACTGTTGTGTAAAGGGCTTAGCGGATAGCATGGAAGGGAAGGAGTTCTCAAGGGCTCATTCTATAAATCTCCTTCTGTGTGtaggactgtgtgtgtttggtgtctgaCTGTATGGGCCTCTGGCTGCTGATATACTGTTTTGCGACCTGTTTTACTTGGTGTTACATCATTAACCTATGTTAAAAGACGTACTTTTTGCTTAACATTTACTGTGTCTTTGTAATTGGCTGGAGAATATCATGGGCACATTTGTCTCGCATAGTTACGTCTAATAATAATGTTGCAACGTCCCTCAATCTGAAAGGCCCAAGTGCCTCCACTGTCCATTTGTCTAGTGCTATTTCTTCAACACAGCAGTATATAGAGGAACGGCAGCAGTTACAGTTGATTAACAGTGTTTCCCACACATAGGTGATGCTTGGGTGTGGCCCCGAGGTATACTGATGAGAGCCCAAGTACATTTTGggccataaaaaaaatcacactttatttataatacatttcgAGAAAACAACTCATCTTGTTTTCAATTTGGCTTTGACACGCACACAACTCGGGAGAGAAAAGAACCAGACAGAGCTGGTAAAGCACATTCATTTCATCTTTATTGATTTTGACGTCAGTTTGTGCAAGTTCATGGTATACACTTAGTCTGTCAGAATAGCTCCTAATATTTGCACAGTCTCATTTTCTGCACATTTTGGTTGCATCTGGTGGCACTTTGCCTGGTTCCCATTTATTGGGCATATAACATTTCTGGCTCCCTATTTAACCACTCAGAACAAACCACTTTAATGTATTGTCAAGTGACAGAATacaacaaatatacagtatacaggtaaTTCAATATAGGATACAGGTAattcacttgattttttttgttcctaaTGATATGTggcaacaccttgaacactcTTTCAGCCACCTCACTCTGTTTCTAATGATAGAACAATTAGCCTGGAGCTATGCTCACGCTCCTCTTTATCAGAAACTAACAACATCGATTAAAAAAGTTATTAACACCTTAGCAGTTTTGCTCTCTCGTTGGTTTTTACTCTTGCATGATTTCATGCTATAATACGGGTATATTTAGAATTTCACATAGAAATGTCATGGTTGAGAGacttgtatgtatatatttcagtttGCACCCACAGCTATGCCGACTCTGCTCTGTGTTGTCGTACGACATACATGAAACTCGACCCAAGTAATCTGTGGGAAACACTGATTACACTACAGATGTAATAAAGGCCAGGCTAGAGCTGTATCATAGTTTTGTGATGATGGCTTTAATAAGTGAACTTAAAGACATGCTTTAACCCATAGTCTTGTTGTATGTCCTATTTGCTGTTTAAAGCAGCTGGCCAAGGTCTTACAGTTCAGAGGTGACAATCATTCCTCATTCCATTAATCATACACTTTAAATTATCGTAAAAAATGATCCAGCCTTATAAGCAAACAACAGGATTTGTGGATATTGGGGATGCCCTATAAATATGATATCCTttcttataataaaaatattgtaaggAAGgatattcaagaaaaaaatcttaaaagcTTTTGGCTTTGGGGTTTGCAGTATCCGACACTGCCGAGTTGCACACATCACCTTCTTTAAACAAGCTGTTTTACTCTGCCATTACATTTTACCCAGACAGCTTATATTATGCCTTGTGGTATCAACAACTTAGAAGTACATACTACAGTGTCTAGTGGAAGGAAGTCAGAGCAACCAGACTTATGTTTGTAATACTGACGTTTCTACAAGAATGCAAACCCTTCACAGCAGTTGTTGCCATTAGGTCTGTCAGACATTTTGATTTCTGATTAAAGGGTGACACATAGAAAGTCTCTAGAACTAGCCTCCATGTTGGTCCTGTTTACCTTATAAAAACACAAGGCAGATCCTACACAATCTGTGTAATATTGCCAGAATCACTTCAGATACATATTTAGCCTTTTCATCCCCTGTATGAACCACTGATCTTCAAAAATCCTGTTGATCTATGCAGATGTGCCTCTGTCATTATATTGTAGATTTGTGCTAATGTAAATTTGTGCTAATTTGTCTCACTGTTGCCTGTCTTTCTTTGAGATTTTGGTGTGTTTTTCCTCTCccacaatcttttttttctactctgTTGCCCTTTCATGGGTCACATGTCAGTTGTTTTTGCGCTGCATTTTCTTAGTCACGTCTCAAAAAGTGCGAGCTGCTTAAGTGAATGTTTTCCTCTTCTGGGCTGGGCAAATTGTGGTTCCGTGgaatttaaaacactgacatggAATCAGACAGACATATATagatattacaattattattacagtgtcaTATTGTCATACAATAGATGCTTTAGTTCACTGtttctcttttaattttttttacacaaagactttgattaaatatttataattcgGTCTCACAGGTCATGACCTTTTTTGAACGTAAGATGAAAAATACAGATATGTTTATGAGAGTTCTGTtctaaggaaaaataaatagagatATGTTAACTATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU440867 lncRNA downstream 2658 7909124 ~ 7909552 (-) True G372168
TU440830 lncRNA downstream 131005 7780062 ~ 7781205 (-) True G372132
TU440779 lncRNA downstream 181102 7730710 ~ 7731108 (-) True G372085
TU440790 lncRNA downstream 207822 7682685 ~ 7704388 (-) True G372095
TU440803 lncRNA downstream 271824 7640173 ~ 7640386 (-) True G372108
TU441021 lncRNA upstream 23009 8016105 ~ 8016388 (-) True G372307
TU441040 lncRNA upstream 89867 8082963 ~ 8084539 (-) False cars2
TU441219 lncRNA upstream 209672 8202768 ~ 8204224 (-) True G372471
TU441222 lncRNA upstream 268339 8261435 ~ 8267189 (-) True LOC113537489
TU441285 lncRNA upstream 435508 8428604 ~ 8444065 (-) True G372522
XM_026931841.2 mRNA downstream 433701 7357271 ~ 7478509 (-) True LOC113537388
XM_026931842.2 mRNA downstream 490410 7357271 ~ 7421800 (-) False LOC113537388
XM_026932157.2 mRNA downstream 609646 7253751 ~ 7302564 (-) False mid1
XM_026932159.2 mRNA downstream 609647 7253751 ~ 7302563 (-) False mid1
XM_026932158.2 mRNA downstream 625413 7253751 ~ 7286797 (-) False mid1
XM_026932396.2 mRNA upstream 13276 8006372 ~ 8010233 (-) True lig4
XM_026931738.2 mRNA upstream 49389 8042485 ~ 8054545 (-) True irs2a
XM_026931731.2 mRNA upstream 69125 8062221 ~ 8066451 (-) True LOC113537312
XM_026931658.2 mRNA upstream 76306 8069402 ~ 8084485 (-) True cars2
XM_026931725.2 mRNA upstream 94684 8087780 ~ 8090097 (-) True LOC113537306
TU440780 other downstream 187415 7718263 ~ 7724795 (-) True G372086
TU440391 other downstream 843679 7058835 ~ 7068531 (-) True LOC113537271
XR_004577289.1 other downstream 843743 7058835 ~ 7068467 (-) False LOC113537271
XR_004577329.1 other downstream 1549007 6358639 ~ 6363203 (-) False LOC113537742
XR_004577328.1 other downstream 1878817 6019687 ~ 6033393 (-) False tpp2
TU441267 other upstream 327888 8320984 ~ 8329026 (-) False timmdc1
TU441284 other upstream 436515 8429611 ~ 8432424 (-) False LOC113537606
XR_004577317.1 other upstream 598311 8591407 ~ 8606840 (-) True tsga10
TU442201 other upstream 1885747 9878843 ~ 9918740 (-) True LOC117596103
TU442843 other upstream 2878188 10871284 ~ 10872546 (-) False lipt1

Expression Profile