RNA id: XM_034300276.1


Basic Information

Item Value
RNA id XM_034300276.1
length 1539
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC113537606
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 8429562 ~ 8432438 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGGAAGTAGTATTTTTATTCCACacgttgctttttttttttttttcagaagcgGACAGTGCACTGGTTTAAAAGCCTAGAGAGGAGCGAATGTTCAGCTGAAATGATTTTCCATTCGAGGACTGTTTACTCTGTTGGCATTTGGTGCTTGTGATCGCCATCTCGTCCAGGAGATAAGGCATTTCTGCACTTTCCCCATCATCTTATCGCCACTGCCATCTCTATTGTCTGAAGCCGGGGGGTCACGAGACGTCacgattattttatttctattccaCAGTCCAAGTCGATTACTCCAGGAGAAATAATCGACTCGACTAATAGACACTAATCTAGGCTAGATATACAGATCTAACAGAGATTAAAGATAGTTTTGGCGCTGTAGCAGctgatctgtatctgtatcagaCTCGATGATTTGTGAGTAAACGAAGTGATGTGCAGAGAAGATGCTGCATGAAGAAAGCCAAGGAAAGACGCACGAGTAGAGGAAAGAGTTGGACTGAAGACTTCAAGgccatcaattttttttttttttttttttggacctgTCAGCATATTACGGTCCTGTAAAACTTCAGAACTGCTAAACCTCCGGGTTAAAGCtcacagcaaaagaaaaaagggggaaaaatgatGCTGAGTCCAGACCAGACGGATCCGGAGCTGCCATGGAGCCACTCGGACGCCGAAAGTGTGTTAAGTGACATGAAGGCTGGCTGCATGTCCGAGGAGCTGAACACGGACGCCGAGGGGAAAGCCAAAGCGCTCGCGCCGCAGCCGCTCACGCGCGAGGAGAAGCGACGGCGCAGGCGCGCTACGGCCAAGTACCGCTCGGCGCACGCGACTCGAGAGCGCATCCGTGTTGAGGCGTTCAACGTGGCTTTCGGGGAGCTGCGGAAGCTGCTGCCCACCCTGCCTCCTGACAAGAAGCTCTCCAAGATCGAGATCCTCAGACTGGCTATTTGTTACATCTCCTATCTGAATCACGTGCTGGACGTTTAATCAGGAGAATGGAcagcgtttaaaaaaaaatgttaaaaaaaaaaaagatgattttttttatatagactAGGTAAACTTACCTGCTCACTCGGTAACTAATCGGCAAAGTGTTAGACAGACTTTAGGGATTAGGCGAACAACTTTTTGAAGGGTTGATTTGAACGTAGAGCCGCTATAATGCCCCTTTAAACATGGTGAGTGCTCCAAGAGCCGTGCACCATTTAAATCCAGACTGCGGTCCCTGCTGGAGCCTAGCCGTCCAAACAGACATGCAAGAGCGCCGAAAGGGACTTTAAAATCACGTGAATAATCTGACAGCAGTGTAGACAAGTGGAGAGAGCAGGCTACAGACCACCAGTTGCACTGAGACTGAACAGAAACTAGACCGAAGGTCCGATTAGCCGCTTAGTAGCTCTAACACGtcgtttttattttctaatgaggacaaaaaaaaaaatttaaaacaaacgaATTATGTACAAGTGCCACTTAGAactattcttatttatttatttatttatttatttatttatt

Function

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09075 NHLH, HEN, NSCL; nescient helix-loop-helix protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU441222 lncRNA downstream 162373 8261435 ~ 8267189 (-) True LOC113537489
TU441219 lncRNA downstream 225338 8202768 ~ 8204224 (-) True G372471
TU441040 lncRNA downstream 345023 8082963 ~ 8084539 (-) False cars2
TU441021 lncRNA downstream 413174 8016105 ~ 8016388 (-) True G372307
TU441014 lncRNA downstream 440364 7988950 ~ 7989198 (-) True G372300
TU441552 lncRNA upstream 342594 8775032 ~ 8788141 (-) True G372742
XR_003403741.2 lncRNA upstream 531147 8963585 ~ 8965621 (-) False LOC113537261
XR_003403742.2 lncRNA upstream 531147 8963585 ~ 8965428 (-) True LOC113537261
TU442113 lncRNA upstream 1327303 9759741 ~ 9759949 (-) True G373288
TU442117 lncRNA upstream 1331181 9763619 ~ 9764526 (-) True G373292
XM_026932384.2 mRNA downstream 13621 8355647 ~ 8415941 (-) True LOC113537751
XM_026932245.2 mRNA downstream 92694 8329650 ~ 8336868 (-) True poglut1
XM_026931720.2 mRNA downstream 100586 8320868 ~ 8328976 (-) True timmdc1
XM_026931946.2 mRNA downstream 109719 8294879 ~ 8319843 (-) False gk
XM_026932280.2 mRNA upstream 97044 8529482 ~ 8554308 (-) False LOC113537664
XM_026932281.2 mRNA upstream 97044 8529482 ~ 8543087 (-) True LOC113537664
XM_034300034.1 mRNA upstream 123573 8556011 ~ 8569035 (-) False LOC113537579
XM_026932136.2 mRNA upstream 123573 8556011 ~ 8567476 (-) True LOC113537579
XM_026932228.2 mRNA upstream 139833 8572271 ~ 8590418 (-) False cracdlb
TU441267 other downstream 100536 8320984 ~ 8329026 (-) False timmdc1
TU440974 other downstream 513241 7912466 ~ 7916321 (-) False fam155a
TU440780 other downstream 704767 7718263 ~ 7724795 (-) True G372086
TU440391 other downstream 1361031 7058835 ~ 7068531 (-) True LOC113537271
XR_004577289.1 other downstream 1361095 7058835 ~ 7068467 (-) False LOC113537271
XR_004577317.1 other upstream 158969 8591407 ~ 8606840 (-) True tsga10
TU442201 other upstream 1446405 9878843 ~ 9918740 (-) True LOC117596103
TU442843 other upstream 2438846 10871284 ~ 10872546 (-) False lipt1
trnar-ucu_14 other upstream 3040442 11472880 ~ 11472971 (-) True trnar-ucu_14
TU444510 other upstream 4876600 13309038 ~ 13315296 (-) False gyg2

Expression Profile