RNA id: TU442201


Basic Information

Item Value
RNA id TU442201
length 919
RNA type TUCP
GC content 0.49
exon number 3
gene id LOC117596103
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 9878843 ~ 9918779 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGCTCACATTTAAAGGAGAAGCCGTGGGCTTCTGGTCGCCAGCGCGCTCACGTTCAACCACATTTATAGCCAGGCTATTGTAGTTATCACAAAGGACCGGACACAGTATTCAAGTACTTCATTATTTCCATGTGTATATAGCCTATATTTCTCCTTGTCGCGCGGACGTTAACAGTGTTTCGGTGCGGACCGAGCGGAGACGTGTCAGTTCGGATTCTCGTCGAGCTGCACTCGAATAAATGGATTCAGAGATTTCTTTTTGCAGCACGAGGCGGTAATAAATAAGTTGGAGTGCTCGGTATTTCTGCTGTAACGTCACTGCGCAGAAGAAAGTATAGAAAGCGGACGGCTCGCGAGGAAGCACGAGCGCTTCTTTTCATGAGGAAAAGACCAGCGGCTTTATTCCAGCAAACCTCTTCGTGACTGTCCCGCTCTGTGTCCCTCACTACCGCCCGGTTTAGCCCATTACATCCCGGGATTGCTTCctatctgcctgtctttctttttttttatccttttctgTGTACACCGGTTCAAAAATGCAGCTCCGGACCGTCTTGGATGTGAAAGTGGTGGACGTGGAGAAAAGGCGGCATCCGTCCAAACACTACGTGTATCTCATCAATGTCACTTACTCTGATACCACGTCCCACATTATCTACCGGAGATACAGCAAATTCTTCGACCTTCAGatgcaGCTTCTCGACAAGTTCCCAATCGAGGGAGGGCAGAAGGACCCCAAAAAGCGATCATCCCTTTTCTTCCAGGTGAGAAAAGGCACTTCCTTTGCtctttttctgttctctgtCATTCAATCACTCCATCccccacactcacacatgcagtgACAAATGCAGGCTGCCAGCAATACTGTCTGTGGTACGCCATTTTGAATGGTTGGCTAGGACACCCTCTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU442160 lncRNA downstream 46518 9831607 ~ 9832325 (-) True G373327
TU442150 lncRNA downstream 53150 9825461 ~ 9825693 (-) True G373317
TU442133 lncRNA downstream 78933 9793369 ~ 9799910 (-) True G373303
TU442132 lncRNA downstream 78933 9793426 ~ 9799910 (-) False G373303
TU442149 lncRNA downstream 86222 9792282 ~ 9792621 (-) True G373316
TU442236 lncRNA upstream 43682 9962422 ~ 9964543 (-) True G373398
TU442515 lncRNA upstream 103797 10022537 ~ 10024885 (-) True G373629
TU442537 lncRNA upstream 165699 10084439 ~ 10084737 (-) True G373649
TU442549 lncRNA upstream 208085 10126825 ~ 10127603 (-) True G373656
TU442548 lncRNA upstream 208443 10127183 ~ 10127603 (-) False G373656
XM_034299861.1 mRNA downstream 55135 9807172 ~ 9823708 (-) True sh3pxd2aa
XM_026932141.2 mRNA downstream 173017 9597014 ~ 9705826 (-) True cfap58
XM_026932385.2 mRNA downstream 331586 9306733 ~ 9547257 (-) True sorcs3
XM_026932386.2 mRNA downstream 490107 9306733 ~ 9388736 (-) False sorcs3
XM_034299956.1 mRNA downstream 1030679 8835487 ~ 8848164 (-) True caly
XM_026931714.2 mRNA upstream 1082 9919822 ~ 9927977 (-) True stn1
XM_034299958.1 mRNA upstream 1082 9919822 ~ 9927674 (-) False stn1
XM_026931715.2 mRNA upstream 1082 9919822 ~ 9927577 (-) False stn1
XM_026931646.2 mRNA upstream 12709 9931449 ~ 9937173 (-) True lrrc58a
XM_026932071.2 mRNA upstream 20556 9939296 ~ 9961370 (-) False fstl1a
XR_004577317.1 other downstream 1272003 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 1446419 8429611 ~ 8432424 (-) False LOC113537606
TU441267 other downstream 1549817 8320984 ~ 8329026 (-) False timmdc1
TU440974 other downstream 1962522 7912466 ~ 7916321 (-) False fam155a
TU440780 other downstream 2154048 7718263 ~ 7724795 (-) True G372086
TU442843 other upstream 952544 10871284 ~ 10872546 (-) False lipt1
trnar-ucu_14 other upstream 1554140 11472880 ~ 11472971 (-) True trnar-ucu_14
TU444510 other upstream 3390298 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 3405342 13324082 ~ 13324173 (-) True trnar-ucu_15
trnar-ucu_16 other upstream 3406777 13325517 ~ 13325608 (-) True trnar-ucu_16

Expression Profile