RNA id: TU442236


Basic Information

Item Value
RNA id TU442236
length 805
lncRNA type inter_gene
GC content 0.38
exon number 5
gene id G373398
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 9962422 ~ 9964543 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTAAAGTGTGATAACACCTCCATTTCCTTTGCCGAAATGTCAGTTAAAAACCACGTTCACCTCAGATGTTTGCTTGCATATTATCCAGCAGCTGTGGAGCGATACAATGACCACTGCACCCACCAACACAAGTTCAGctctcttcttcctcttcatctccTTTACACCCTTCTAATTGACTCTACAAGGCTCAGGTTTGGATGATTTTCTAAAATTTGTCATCTACTGTCTGATCTTATCCATTATCCTGGTTTTACTGTACACACTTGGAGTCTTGCTCTTTAAAGAGATATCTGTATGGAGAAACAGATCACTGAGCTCCAATGGAAAGGTTTCTGAAAAAACAGGAGCGACAACTAACAGGCGGCACACTTATAAAGAGAGAATAAACTCAGTCTATATGCAATGGATACCTGGCGACAATACATCAGGCTAACCAAACTACGCATACTATACTTCACTGTTGTTCCCattacatttatgtatatatcTGCAACATATATCTGCAATATCTGTAATCACAATATACtgtgaactttaatgacataaATTTCTGTATATTCCCacttgtgactttttttttaggtgttATTAGAACtttattggctcactaggtgtTATTAGAACTTTTGCCAATAGAGGGTGAGATAGGTTTTAACAGCTGAACAAGGTaagtaaacatatattttatgacatttaGCAGCAAAATTGCTGCTAAAGCAACTCACACAGCAAAACTTTTACCCAGTAGCTGGGGTTAGAATATGGTTGACCACAGATTATGCATAATCCCCCCCACCCCGAA

Function

GO: NA

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU442160 lncRNA downstream 130097 9831607 ~ 9832325 (-) True G373327
TU442150 lncRNA downstream 136729 9825461 ~ 9825693 (-) True G373317
TU442133 lncRNA downstream 162512 9793369 ~ 9799910 (-) True G373303
TU442132 lncRNA downstream 162512 9793426 ~ 9799910 (-) False G373303
TU442149 lncRNA downstream 169801 9792282 ~ 9792621 (-) True G373316
TU442515 lncRNA upstream 57994 10022537 ~ 10024885 (-) True G373629
TU442537 lncRNA upstream 119896 10084439 ~ 10084737 (-) True G373649
TU442549 lncRNA upstream 162282 10126825 ~ 10127603 (-) True G373656
TU442548 lncRNA upstream 162640 10127183 ~ 10127603 (-) False G373656
TU442550 lncRNA upstream 162640 10127183 ~ 10127889 (-) False G373656
XM_026932071.2 mRNA downstream 1052 9939296 ~ 9961370 (-) False fstl1a
XM_026932070.2 mRNA downstream 1052 9939296 ~ 9961370 (-) True fstl1a
XM_026931646.2 mRNA downstream 25249 9931449 ~ 9937173 (-) True lrrc58a
XM_026931714.2 mRNA downstream 34445 9919822 ~ 9927977 (-) True stn1
XM_034299958.1 mRNA downstream 34748 9919822 ~ 9927674 (-) False stn1
XM_026932036.2 mRNA upstream 3908 9968451 ~ 9970159 (-) True gja8b
XM_034300288.1 mRNA upstream 29158 9993701 ~ 10043255 (-) False bcl9
XM_034300286.1 mRNA upstream 29158 9993701 ~ 10043255 (-) False bcl9
XM_026931972.2 mRNA upstream 29158 9993701 ~ 10006843 (-) True bcl9
XM_026932341.2 mRNA upstream 139989 10104532 ~ 10116972 (-) True morc3b
TU442201 other downstream 43682 9878843 ~ 9918740 (-) True LOC117596103
XR_004577317.1 other downstream 1355582 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 1529998 8429611 ~ 8432424 (-) False LOC113537606
TU441267 other downstream 1633396 8320984 ~ 8329026 (-) False timmdc1
TU440974 other downstream 2046101 7912466 ~ 7916321 (-) False fam155a
TU442843 other upstream 906741 10871284 ~ 10872546 (-) False lipt1
trnar-ucu_14 other upstream 1508337 11472880 ~ 11472971 (-) True trnar-ucu_14
TU444510 other upstream 3344495 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 3359539 13324082 ~ 13324173 (-) True trnar-ucu_15
trnar-ucu_16 other upstream 3360974 13325517 ~ 13325608 (-) True trnar-ucu_16

Expression Profile