RNA id: TU442549


Basic Information

Item Value
RNA id TU442549
length 779
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G373656
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 10126825 ~ 10127889 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAGGACAATGGTTCAGTAAGTCCAGATAGGGTGCCAGTGCAAAGACATCCTTCTCCAGTGAGAGGAAATCGCTCTGGGCATGTTCCATGTACACTGTACGAGTATTAACACTGCACCATGCCCACCGGACTGCATCCTGAGTAAACACTACCTCTACAGGCTGAGTGAAAATGGGCTGAAGGGACAAGAAGAATGGCAGAGAAGAGCAATAAAGCTCCTCAAACTGTTCTTTTTGTGTCACTGCCTTTTTTCGAACATCTAGGGGCAAGAGGTCCATGATGTCATTTGAGAAGTAAACTGGGCATGTATAGGATTTAGGGAGGACTTTAATGTAAGGGCTCCATTCTGCTGTATCTCCATAATATCTCTCAGCAATAAGGAAAGAACAAAGTGCAATGAGAGGAGATACTGGGGGCTTCCACCTGTACagacacaggacagagagaaaaaactaaaCAAGACCATTTGTACTGTCATCCCATCCCAATATAGTGATATAAAATGTCATGCTTCTTTCActatagtgcaaaaaaaaaaaaacaagacatgtTTATACAGAGTCTATGTAGTGTGTAATACACCACTAATCATAATCATTTAATGTATACATTCACACTTTTGTCCAGTTCAGTATTTCTCCTTGATCGGAAAGTTGGTGGAAAAGACCATACAATTAAATTAAGTGAGATATTAGCACCTCTTTATGTATTCCCCCATGTAACTCTTCAGAACTGAGCTTGTAGTCAGCAAACACCTCTCGGGTAAGGAAATCACCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU442537 lncRNA downstream 42088 10084439 ~ 10084737 (-) True G373649
TU442515 lncRNA downstream 101940 10022537 ~ 10024885 (-) True G373629
TU442236 lncRNA downstream 162282 9962422 ~ 9964543 (-) True G373398
TU442160 lncRNA downstream 294500 9831607 ~ 9832325 (-) True G373327
TU442150 lncRNA downstream 301132 9825461 ~ 9825693 (-) True G373317
TU442553 lncRNA upstream 1206 10128809 ~ 10129630 (-) True G373657
TU442551 lncRNA upstream 1329 10128932 ~ 10129414 (-) False G373657
TU442554 lncRNA upstream 2229 10129832 ~ 10130057 (-) True G373658
TU442578 lncRNA upstream 64393 10191996 ~ 10195709 (-) True G373678
TU442581 lncRNA upstream 64393 10191996 ~ 10246820 (-) False G373678
XM_026931753.2 mRNA downstream 2852 10120542 ~ 10123973 (-) True cbr1
XM_026932341.2 mRNA downstream 9853 10104532 ~ 10116972 (-) True morc3b
XM_026932342.2 mRNA downstream 9892 10104532 ~ 10116933 (-) False morc3b
XM_034300288.1 mRNA downstream 83570 9993701 ~ 10043255 (-) False bcl9
XM_034300286.1 mRNA downstream 83570 9993701 ~ 10043255 (-) False bcl9
XM_026931752.2 mRNA upstream 5609 10133212 ~ 10141577 (-) True cryzl1
XM_034300007.1 mRNA upstream 90005 10217608 ~ 10236158 (-) False LOC113537761
XM_026932399.2 mRNA upstream 90005 10217608 ~ 10236158 (-) True LOC113537761
XM_034300202.1 mRNA upstream 227623 10355226 ~ 10359434 (-) False LOC113537273
XM_034300203.1 mRNA upstream 227623 10355226 ~ 10359434 (-) False LOC113537273
TU442201 other downstream 208085 9878843 ~ 9918740 (-) True LOC117596103
XR_004577317.1 other downstream 1519985 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 1694401 8429611 ~ 8432424 (-) False LOC113537606
TU441267 other downstream 1797799 8320984 ~ 8329026 (-) False timmdc1
TU440974 other downstream 2210504 7912466 ~ 7916321 (-) False fam155a
TU442843 other upstream 743681 10871284 ~ 10872546 (-) False lipt1
trnar-ucu_14 other upstream 1345277 11472880 ~ 11472971 (-) True trnar-ucu_14
TU444510 other upstream 3181435 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 3196479 13324082 ~ 13324173 (-) True trnar-ucu_15
trnar-ucu_16 other upstream 3197914 13325517 ~ 13325608 (-) True trnar-ucu_16

Expression Profile