RNA id: TU442578


Basic Information

Item Value
RNA id TU442578
length 3684
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G373678
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 10191996 ~ 10246820 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAATTTGCACTGAAGCAAATGGAGAAACTAGCAAATTACttctttaagaaaacaaaaaaacttctatttttttccccactgtttCCAGAAACATGTTTCTTGCCTTTGGCCATGTATGAGGTTAGATGTGAAATGCTTGATATCCACCACCATGGGGAAAATCAAATGTTCCTGAATTATCCCAAGTAAGAATAATTACGTATATTAGCGCATTAAtagtaggaaaaaaaaccaaactgaTTGTAAAAGTTTGTTTCCCTTTCCAGATGCAATATACAATCTTGCACATCATTCGTATATTTTCTCGTAATAACTTGTAAAGCAGCCTTTATAACTGCGTCCAATCTTTTTCGCAACCTCAAACCAGCTTTTGGATTCTGTCAGTCATTATATTCCATGTGCTCATGTGAACATTACGACATCACACAAACAAGAGGACACAGATGATAAATGTTTTAGACAAAACACCATGCATTCATTATTTCTTGGTCCAACTGAGCTTTAATTGCAACGTTTAAGACAATACACTGCTTCTACATTGATAACAATATGCTGTCATCAACATAATTATTCAAGTCATAATATATTATACTCCTTTCAaagatttaaacacaaacacatacggTACCGTCGACTCATTGGGACTTGGTAAAAAATACAGGGGAAGAGCCTACAGGTTCATaatgtacagagagagagagagagagagacagagagagagagagagagagagagagagagagagagagagggttatgagggacagagagatgcaaggacagggagagaaaaaggTAAAGGTAACCCTTCAATGTCctctaaacaaaatatttatcacatgcacacgtccacacacacacacacatccacacacttgACTTTAATCTTCTCAGTTTAGTAATGCTACCATTCtcacccatccatccaaacTATTCACTTTCAAATCCcagaatgaaaataataataataacaataatgaaatgtagaaatatattCTGAAGAACCAGtgccatatttttgttttcacgAAACACAATGTGGGAGAAAATCATCTGTCCTGATCTCTGATCTCTTGAAAATACACCATTTATGCACATCACTTCTATGTAATACAACTTCCTGTATTCTCCTGCCCTGTACCACTATATTCCATTTACAGctcaaagaaaagaaacacatgCACTATGAAACACACCCTGATATTTCTCATCTTTACAAATATAATCCAATTACAGTGTTAACCTCTACTGTCTAACTGCTACGCTCTAAGCAGGTCTCATCGTTTAAAGGAAGGACTGGacagtaaaaataatatctgaaaaaaaaaggaaacacattAGTAATAcaaaattgataataaatattactCAGTGTTAAATAGCTTACTTTGTGTAGCAAAATGAAACCCATGAAAAGGGACAATAAGACAGAAAACAATTCTGTACTCATCATTGGCtctgcatttacagcatttcagAAGTATTTGACACTAATAGTGGAGGAACATGATGGTAAATAATGCTGGATTAGCAATAAAAGTAGCTCTAAGTATTAAAATCCAGTGGTATTTCTACAATACgttaaaaaaatgcttatacATGGTTAGGAATTAACTTCAGTAATCAGTCTTGGTCACTTTGTTAATCAAATGTTCACCGCCCTTCTCGCACATTTCACCTTCAGCTCTGAAGGTCTAGGTCATTAACCACCAggagaacccttgaggaacctttttttctaaagagaacagaggaataaaaaatacagctaGAGCTGAATATTGATGGTTAAACATCACATCATGATTGCAATCTTAATAACATTTTCCCAAAACCAGCCTGCTGATTATGTGACACCTTTTAGAATACAGATCGAAggataaataaaacagcacaacataTGGTGGCAAAATAAGACTGGAGCGTTCACGCTTTTTCTGCTGACAAACAGCCCAATACAGCAGATCTCTGGAGTCAAATATTTTgtagttgcattaaaaaaactatacaCCATATCTATTTGTGCCTTTTACGAATTGGCACAATGCTTCAGTCTTTGACTATCTCAGTGATTTGAAATTCATTCTAGAACATACCTCTCTATCATTCTAGAactcaaatcatttttaaacctaCCTCTGAATTCATTTTGAGAACATGCCTTTGCATTCTAGAGCTTAATTCATTCTAGAATATGTCTCTAAGTTCTACAACTGAACTGGCAATGCCAACTACAGAGTAAAACACTCTACTGGGATATTTGCTCAAGAACAAATTGCAAAACaaataatgtacaatataaTCCACATTTTTAAGCTCATACAGTTGAGAGAATTTGTTTGCTGTGAGCAAAATCAGCCCCTGTCATAAACCCAAGCTAGTTTTGGCCAGCATACCATTCATGTAGACAAATTCATTACGACTATGTCAATGCTCGGGCTACCATGACTGTTAAAGGAGCAATCCAGCATTTTACAACATAATATCTATCCACCAAATCTGTAGGCTGTGTAGGATTGCCACAGATCAGAATTATGACACATTTCACTGTAGtgagaaaaggacaaaaattaaacaaatctcTCTTATAACGGAAGTTTAAGGGCAGCTGTTAGGTCAATAAAAGTTTATGTGAAAGACATATTTTAGGAAATCTTCACTCAAAGgtatttgtaaataatgttcTACATGTATGTGTCTACATTATGTGTAAATAagacactaggggtgtaacacaatgacactatctgtatctttTTAGTTCTCCAAGTCTTTATTCCAgggggtcttttttttttttttttttaaactatgaaCCTTACTACTAAGACCtcttcaacctcagctacatcccTCCAGTTCATAACTGGCCTCCActagagagatgagagagggctttttttttaatggtgttgttatttattgtgtttgtacCTGCTCAACATACACTATCGCAAACTACAAAACAATGCAAACAACTTTTGTGAGAATTTTCTCTCAAGTCTGTTTTGTTATAAACCTTTAGTGTTAGACTCCAACAGCTGTAGTTTCGAATGTGTCATATAGTCACACATTTTACACCTAGTGCCCTTacacttccattataagtgagttttgagtaaacagtgtttctttctttctcactacAGAGAAATGCACCAAAACGTTTGTCTGTggaagtctcacacacactacacacgctGTGGATAGACATTACGCTGAGGAACACCGGAGTATCCCTTTAATACACATCTGTAAACCACAATATTTGttcaagtgaaataaaaaaaaaaaaaaaaaaaaaaaaagaaactgaaagatTGCTTAAGACTGTTACAGCTTACTCAGAGACTAACATCCATCCCCTCgtacttcctctctctctaacacattcagacacactcacacatattcacacacacacacacacacacacaagggggCGTGGTGTAGAGTGCTGTGGGATTGTCACATTAGGCTGGTAACACAGTACAGGAGGAAGTATGGAATCTAGGGTGGAGGAGGTCAAAGTTCACGAGGGTCAGGGTTCGTCGAATAGCTGCAGGTCGAGTCTGACCACTATCTCTCCTGTGGGGACCTCGTGTAAGAGAAGCCTCTTAGTGATCGGACCTTTCGAACCCTGATCCTTTTTAATGTCCGCCAGCCGAATCTCTGTCCTGCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU442554 lncRNA downstream 61939 10129832 ~ 10130057 (-) True G373658
TU442553 lncRNA downstream 62366 10128809 ~ 10129630 (-) True G373657
TU442551 lncRNA downstream 62582 10128932 ~ 10129414 (-) False G373657
TU442550 lncRNA downstream 64107 10127183 ~ 10127889 (-) False G373656
TU442549 lncRNA downstream 64393 10126825 ~ 10127603 (-) True G373656
TU442619 lncRNA upstream 59294 10255003 ~ 10268661 (-) True G373714
TU442626 lncRNA upstream 92671 10288380 ~ 10289373 (-) True G373719
TU442628 lncRNA upstream 94928 10290637 ~ 10292578 (-) True LOC113537663
XR_003403786.2 lncRNA upstream 94934 10290643 ~ 10292578 (-) False LOC113537663
TU442650 lncRNA upstream 226454 10422163 ~ 10423467 (-) False cab39l
XM_026931752.2 mRNA downstream 50419 10133212 ~ 10141577 (-) True cryzl1
XM_026931753.2 mRNA downstream 68023 10120542 ~ 10123973 (-) True cbr1
XM_026932341.2 mRNA downstream 75024 10104532 ~ 10116972 (-) True morc3b
XM_026932342.2 mRNA downstream 75063 10104532 ~ 10116933 (-) False morc3b
XM_034300286.1 mRNA downstream 148741 9993701 ~ 10043255 (-) False bcl9
XM_034300007.1 mRNA upstream 21899 10217608 ~ 10236158 (-) False LOC113537761
XM_026932399.2 mRNA upstream 21899 10217608 ~ 10236158 (-) True LOC113537761
XM_034300202.1 mRNA upstream 159517 10355226 ~ 10359434 (-) False LOC113537273
XM_034300203.1 mRNA upstream 159517 10355226 ~ 10359434 (-) False LOC113537273
XM_026931685.2 mRNA upstream 159517 10355226 ~ 10358112 (-) True LOC113537273
TU442201 other downstream 273256 9878843 ~ 9918740 (-) True LOC117596103
XR_004577317.1 other downstream 1585156 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 1759572 8429611 ~ 8432424 (-) False LOC113537606
TU441267 other downstream 1862970 8320984 ~ 8329026 (-) False timmdc1
TU440974 other downstream 2275675 7912466 ~ 7916321 (-) False fam155a
TU442843 other upstream 675575 10871284 ~ 10872546 (-) False lipt1
trnar-ucu_14 other upstream 1277171 11472880 ~ 11472971 (-) True trnar-ucu_14
TU444510 other upstream 3113329 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 3128373 13324082 ~ 13324173 (-) True trnar-ucu_15
trnar-ucu_16 other upstream 3129808 13325517 ~ 13325608 (-) True trnar-ucu_16

Expression Profile