RNA id: TU442843


Basic Information

Item Value
RNA id TU442843
length 1263
RNA type TUCP
GC content 0.52
exon number 1
gene id lipt1
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 10871224 ~ 10872556 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCCCCTATGAGTAGATAAACTCCAGCCTGAGTGTGAAAGTGAATAAGCTTATTAAGATACACAGAAGTTTCGTCTCAGTCTGTGGAACAGTGGAACAGTGGAACAGATAATCAAGACTTTCAATCAAGAAAAGTTCAGAAATGATTCTGAGGACTTTGTCGCGGGTGTTCCTCAGGACACGTGACCTCAGCCGGCTCGCGCGACGCAAGAGCACTTTAAACTCGTGTTTTGATGAGAGCGGTAAAGCGGGTCTCATCCTCAAGTCTTCATCCACGGACATTTTCCAAAACCTGGCTCTGGAGGACTGGATACATGAAGCGTGTCGATGTGCAGAGCCGGAGCATCTTGTTGTTGTGGAGGAACGCTCCGGCGGTGGTGATCGGGAGGCACCAGAACCCCTGGCAGGAGTGTGACGTGCAGCTGCTGAGGCGGACGGGAATCCCGGTGGCCAGGCGGCGGAGCGGCGGCGGAACCGTGTACCACGATCTGGGCAACATAAACATGACTTTCTTCACCTCGAAGAAGAAATACGACCGCATGAGGAACCTCGGGGTCGTGACCGGGGCTGTGAAGGCGCTCAGGCCGAATCTGGATGTCTGTGCTACAGAGAGGTTTGACATTATACTTAACGGGTGTTATAAAATCTCCGGGACTGCAGCCAGGCTGGGAAGGACAGCCGCCTACCATCACTGCACCCTGCTGTGTTCCGCAGATCGCTCTGTCCTCTCATCAGTCCTGAAAAGCTCATGCACTGGCATTAAAAGCAACGCCACCCCCAGTGTGCCTTCCCCTGTCACAAATCTGTCAGACCACCACCCCTCTCTGAACCCCGAGTCCCTTATGGACGCCATCGCGTCTCGTTATAATAAAGAGTTTGACTTTGACAGTCCTGTCCTCACGGTCGACCCAGGATCAGAAGTGCTAATGCCTGGCATTCAAAAGATGACCTCTGATCTGAGAAAGTGGGACTGGGTTTATGGAAAGACCCCAAAATTCAGCATTTGCACAACTTTTGTGGTGGAGAACACTAACGTTGGACTGGAGATAGACATCAAGAATGGGGTTGTAGAAACATGTGTGATGGTTGTACCCCATGACTGGCTGCCTGCAGACTTCGTGAAAGAGTTCTGCTCCAGTTTGACAGGCGTCCGGTTCTGTCCGAATGAGTTCGCTGTGTCTGTAGCAGCTTTCCTGAGAACTACCTCATCTTCACCTCAGCATGCCCAAAACACACTCAGCCTCTATGAGAACATTGTATcagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577288.1 lncRNA downstream 74087 10676632 ~ 10797197 (-) True LOC117596123
XR_004577287.1 lncRNA downstream 76727 10676632 ~ 10794557 (-) False LOC117596123
TU442685 lncRNA downstream 306360 10495636 ~ 10564924 (-) True G373762
TU442650 lncRNA downstream 447817 10422163 ~ 10423467 (-) False cab39l
TU442628 lncRNA downstream 578706 10290637 ~ 10292578 (-) True LOC113537663
TU443009 lncRNA upstream 55921 10928467 ~ 10929554 (-) True G374040
TU443008 lncRNA upstream 57193 10929739 ~ 10933407 (-) True G374039
TU443070 lncRNA upstream 195185 11067731 ~ 11067952 (-) True G374091
TU443072 lncRNA upstream 212096 11084642 ~ 11120831 (-) False G374093
TU443073 lncRNA upstream 243126 11115672 ~ 11120831 (-) True G374093
XM_026931840.2 mRNA downstream 1188 10850376 ~ 10870096 (-) True eif5b
XM_026932043.2 mRNA downstream 32323 10806435 ~ 10838961 (-) True arhgef7b
XM_026932044.2 mRNA downstream 32326 10806435 ~ 10838958 (-) False arhgef7b
XM_034299961.1 mRNA downstream 172593 10696458 ~ 10698691 (-) False sox1b
XM_026931732.2 mRNA downstream 172596 10696458 ~ 10698688 (-) True sox1b
XM_026932231.2 mRNA upstream 61599 10934145 ~ 10946702 (-) False map2k7
XM_034300368.1 mRNA upstream 61599 10934145 ~ 10946702 (-) True map2k7
XM_026932232.2 mRNA upstream 61599 10934145 ~ 10946701 (-) False map2k7
XM_034300182.1 mRNA upstream 76532 10949078 ~ 10974287 (-) True pkn1a
XM_034300186.1 mRNA upstream 78595 10951141 ~ 10995765 (-) False pkn1a
TU442201 other downstream 952544 9878843 ~ 9918740 (-) True LOC117596103
XR_004577317.1 other downstream 2264444 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 2438860 8429611 ~ 8432424 (-) False LOC113537606
TU441267 other downstream 2542258 8320984 ~ 8329026 (-) False timmdc1
TU440974 other downstream 2954963 7912466 ~ 7916321 (-) False fam155a
trnar-ucu_14 other upstream 600334 11472880 ~ 11472971 (-) True trnar-ucu_14
TU444510 other upstream 2436492 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 2451536 13324082 ~ 13324173 (-) True trnar-ucu_15
trnar-ucu_16 other upstream 2452971 13325517 ~ 13325608 (-) True trnar-ucu_16
trnar-ucu_17 other upstream 2453447 13325993 ~ 13326084 (-) True trnar-ucu_17

Expression Profile