RNA id: TU443088


Basic Information

Item Value
RNA id TU443088
length 629
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G374105
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11139183 ~ 11139811 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAACATTGCCAGCCCAACTGCCATCCTCTCTGCTCAACTCTGGCATGATGGTTTGAGCTGggtctcctctcttcctctcataGCCTCAGATGGAGGGATGACAAATGGATAaagcagcacaagggggaccacagaggaaggaaagattggtgtaaaaaaaaaaaaacaggttctGGATGGACCCTGGATTGGTTTGGCCTTACTATAGATCCAGGTAGATCCAGATTATTTGAGTCCAATGATGACTCAAGAAAATAGCTTCTCCCCCTAACTCACAAATTAGATCAATaaaggataaataaaatattaaactacaaatgtctgtctcttttagtaaaaatacacatacaaaaacTGCATCTAAATGCCCTGGAAAGCACTCCTGAGGCTTATGTCTCTGGTGGCATCGTCttcttacttaaaaaaaaaaaaactgatatgaGTCAACACTAGTGAGCCGAAAAATGAAAATTTGCAAGCAGCTGACAGTGAGTTTTGTCCTTTTGGCTTCTTTCTTAGTATCTTAAAAAGATAGTACTTTTGAAGAAGAAATATATCTTTAGATCTTCACTGATGTAGGTTTCTAGCTGTTGGTCAGTTCTCTTTGAAGATCCCCACCTGCATCCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU443072 lncRNA downstream 18352 11084642 ~ 11120831 (-) False G374093
TU443073 lncRNA downstream 18352 11115672 ~ 11120831 (-) True G374093
TU443070 lncRNA downstream 71231 11067731 ~ 11067952 (-) True G374091
TU443008 lncRNA downstream 205776 10929739 ~ 10933407 (-) True G374039
TU443009 lncRNA downstream 209629 10928467 ~ 10929554 (-) True G374040
TU443094 lncRNA upstream 7643 11147454 ~ 11147673 (-) True G374111
TU443180 lncRNA upstream 97251 11237062 ~ 11237431 (-) True G374196
TU443185 lncRNA upstream 98430 11238241 ~ 11242837 (-) True G374198
TU443184 lncRNA upstream 98906 11238717 ~ 11242837 (-) False G374198
TU443231 lncRNA upstream 219032 11358843 ~ 11360421 (-) True G374230
XM_026931676.2 mRNA downstream 87071 11046759 ~ 11052112 (-) True trappc5
XM_026932266.2 mRNA downstream 93118 11025293 ~ 11046065 (-) True mcoln1a
XM_034300386.1 mRNA downstream 119203 11004546 ~ 11019980 (-) False si:ch211-214c7.4
XM_026931664.2 mRNA downstream 121479 11001667 ~ 11017704 (-) False si:ch211-214c7.4
XM_034299986.1 mRNA upstream 107998 11247809 ~ 11258475 (-) True si:ch211-243a20.3
XM_026932104.2 mRNA upstream 135451 11275262 ~ 11280128 (-) False emp1
XM_026932103.2 mRNA upstream 135451 11275262 ~ 11279363 (-) False emp1
XM_026932105.2 mRNA upstream 135451 11275262 ~ 11279214 (-) True emp1
XM_026932121.2 mRNA upstream 162972 11302783 ~ 11308486 (-) False LOC113537574
TU442843 other downstream 266637 10871284 ~ 10872546 (-) False lipt1
TU442201 other downstream 1220443 9878843 ~ 9918740 (-) True LOC117596103
XR_004577317.1 other downstream 2532343 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 2706759 8429611 ~ 8432424 (-) False LOC113537606
TU441267 other downstream 2810157 8320984 ~ 8329026 (-) False timmdc1
trnar-ucu_14 other upstream 333069 11472880 ~ 11472971 (-) True trnar-ucu_14
TU444510 other upstream 2169227 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 2184271 13324082 ~ 13324173 (-) True trnar-ucu_15
trnar-ucu_16 other upstream 2185706 13325517 ~ 13325608 (-) True trnar-ucu_16
trnar-ucu_17 other upstream 2186182 13325993 ~ 13326084 (-) True trnar-ucu_17

Expression Profile