RNA id: TCONS_00008107


Basic Information

Item Value
RNA id TCONS_00008107
length 3989
RNA type mRNA
GC content 0.45
exon number 19
gene id XLOC_004248
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 34488869 ~ 34522249 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGAAAACTATTACATAGAGCTTTTCAAACTATTTTGTGAAACTGCGTTCATATCAcaatatcacagaaaaataaaatatcgcaatatcatattttttcaatatcgagcagccctaatccAAACTATTTGAAATATAATGAGCACTGCAATTTGATGATACAAAAGCAACTGTTATTATAAGCATGAATGAACTTCTACGTCTGCAGAGGCACAGGTTaagtaaataattttgttaacTCATAGTTCAGTCTATATATTACTTCTTATACCGTATAttatttcaaaaactaaaaaatgtcaatgatagtcactttgttaaactgaatttattgaattttcaacatcaaaagtggacagagcagataTCAACATTCCATagtgcaattcacaaccgtaagtaaacagaaataataacagttaataacagtttttttttttttttttttttttttacaatgcctTGAATACTTAAAACCAAAGGCAAAATATTTTCAGTAGTGAAAGGACTTTTTTTCCttagtttttactgtaaatgacAACACATTGATTAATCAGTTTTGGTTCTTTTTTGATAAAACAACTGTTTGTTTCAGGATATGCTGACTTGAACATTTTGTCTTATCATATTAGTCTTATCTGTTAATCTTATTGTTATGGAAAACAATGTGTGATGTCAAAGTTGTTGCCAAAACTTACTGTATTTATCCTGTTCTCTTTCAGGAGAGAAGGAGGTTGACAATTATTGCTTCCCTTGTTGACTTTGTGAGGATTACAAATCATGCCTCCAAGACCCTCTTCGGGAGAGTTATGGGGCATCCATTTGATGCCCCCCAGGATTTTGGTGGACTGTCTGCTGCCCAATGGCATGATCCTGACACTAGAGTGCCTCCGGGAGGCTACGCTCATAACAATCAAACATGAACTGTTTAAGGAGGCTAGGAAATACCCCCTACACCATCTGCTGCAGGAGGAGACCTCTTATATTTTCGTCAGTGTAACGCAAGAGGCAGAGCGAGAGGAGTTCTACGATGAGACCAGAAGACTCTGCGACCTTCGGCTTTTCCAGCCATTCCTAAAAGTTATCGAACCTGTAGGGAACAGAGAGGAAAAGATCCTCAACAGAGAAATTGGTTTTGCCATTGGCATGCCAGTGTGTGAGTTTGATCTAGTGAAGGATCCTGAGGTGCAGGACTTCAGGAGAAATATCCTTAATGTCTGCAAGGACTCAGTAGAGTTGCGGGACGCCAGCGGGGCACACAGTCGAGCACTATACGTTTATCCTCCTAACGTGGAGTCTTCACCAGAGCTTCCAAAGCATATATATGGCAAATTAGACAAAGGTCAAATCATTGTGGTCATCTGGGTGATCGTCTCGCCCAACAACGACAAGCAGAAGTACACACTAAAGATCAATCACGACTGCGTACCTGAGCAGGTGATCGCCGAAGCCATCAGGAAGAAAACCAGAAGCATGCTGCTGTCAGCCGAGCAGCTAAAGATGTGCGTGCAGGAATATCAGGGCAAATACATCCTGAAGGTCTGCGGCTGTGACGAGTATCTTTTGGAAAAGTACCCCATCAGTCAGTACAAGTATGTACGGAGTTGCATTATGCTGGGTCGCTTGCCAAACCTCATGCTTATGTCCAAGGACAGTCTTTACTCTCAGCTGCCGATGGACAACTTCACCATGCCCTCCTATTCCCGCCGCATCTCCACCGCCACGCCTTACATGAACGGAGAGGCCTCCACCAAATCTCTCTGGACCATTAACAGCACCCTTAGGATACGGGTCCTCTGCGCAACATACGTTAATGTGAACATTCGGGACATTGATAAGatttatgTGCGGACGGGGATCTACCATGGTGGAGAACAGTTGTGTGATAATGTCAACACGCAGCGTGTCCCGTGTTCAAATCCGAGGTGGAACGAGTGGCTGACTTATGACATGTACATTCCTGACATCCCCCGGGCGGCTCGtctctgtctctccatctgtTCTGTGAAAGGAAGGAAGGGGGCAAAAGAGGAGCACTGTCCACTGGCCTGGGGAAACGTCAACCTGTTCGactacacacacactctggtCTCAGGAAAGATGGCACTGAATCTGTGGCCTGTACCACACGGCCTAGAAGACCTGCTTAACCCCATCGGTGTCACAGGCTCCAACCCTAACAAGGAAACCCCATGTTTAGAGCTGGAGTTTGACTATTTCAGCTCACCTGTTAAGTTCCCTGACATGGCTACAATTGAGGATCACGCTAACTGGATAATATCCAGAGAGATGGGATACAATTACTGCCAGTCTGGACAGAGCAGTAGAGTGGCACGAGACCATGCAATGACAGAGGCAGATATAGAGCAACTTCGGCAGCTGGGAAACAGGGACCCGCTTTCTGAGATCACTGAGCAGGAAAAAGACTTCCTATGGAGGCACAGGCAGTATTGTGTAAATATACCAGAAATCCTGCCCAAGATTCTGCTGGCGGTGAAGTGGAATTCCAGAGATGAAGTTGCACAGATGTATTGCCTTCTGAAAGATTGGCCTGCAATAAAGCCGGAACAAGCCATGGAGTTGCTTGACTGTAACTACCCTGATCCAATGATCCGAGACTTTGCGGTTCGGTGCCTTGAGAAGTATCTAACCGATGACAAACTCTCGCAGTACCTCATTCAATTGGTTCAGGTTTTGAAGTACGAGCAGTATCTTGATAACCCACTGGTGCGATTTCTGCTAAAAAAAGCTCTCACCAACCAGAGGATTGGGCACTTCTTCTTTTGGCATTTGAAGTCAGAGATGCACAATAAAACTGTGAGTCAGCGGTTTGGCCTACTGCTGGAGTCGTACTGCCGCGCGTGTGGCATGTACCTGAAGCACCTGAGCAGACAAGTGGAGGCCATGGAGAAGCTCATCAACCTCACAGACATTCTCAAACAGGAGAAGAAGGATGAAACTCAGAAGGTGCAAATGAAGTTTCTAGTGGAGCAGATGAGGCGACCAGACTACATGGATGCCCTCCAAAATTTCACCTCTCCACTAAACCCTGCCCACCAGCTGGGGAACCTACGactTGAAGACTGCAGAATCATGTCCTCTGCCAAGAGACCGCTCTGGCTGAACTGGGAAAATCCTGACATCATGTCCGAACTTCTCTTCCAAAACAATGAGATCATCTTCAAGAACGGAGATGATCTGCGGCAAGACATGTTGACGCTTCAGATCATCAGAATAATGGAGAACATTTGGCAAAATCAGGGTCTGGACCTGAGAATGCTCCCCTATGGCTGCTTGTCTATTGGAGATTGTGTGGGTCTCATCGAGGTGGTAAGAAGTTCTCACACCATCATGCAGATTCAATGTAAAGGAGGCCTGAAGGGTGCGCTGCAGTTTAACAGTACAACGCTGCATCAGTGGCTAAAAGACAAGAACAAGGGTGAAATGTACGACATGGCTATAGACTTGTTTACGCGATCCTGTGCTGGCTATTGTGTGGCCACTTTCATTCTGGGTATTGGTGACAGGCACAACAGTAACATCATGGTGAAGGATGATGGGCAGctgtttcatatagattttggtcactttttggACCACAAGAAGAAGAAGTTTGGCTACAAGCGAGAGCGAGTGCCGTTCGTCTTGACTCAAGACTTCCTAATTGTGATCAGCAAAGGAGGAACCCAGGAGTGCACTAAAACCAGAGAGTTTGAGAGGTTTCAAGAGATGTGCTACAAGGCATACCTGGCCATCCGACAGCATGCCAACCTCTTCATCAACCTCTTCTCCATGATGCTGGGCTCAGGAATGCCGGAGCTGCAGTCCTTCGACGACATCGCTTACATCCGCAAGACTCTGGCATTAGACAAAACCGAGCAGGAAGCCCTGGACTATTTCATGAAGCAGATGAATGACGCTCACCATGGCGGATGGACCACCAAGATGGACTGGATCTTCCACACCATCCGTCACCATGCCCAAAACTGA

Function

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:0016310 phosphorylation biological_process
GO:0048696 regulation of collateral sprouting in absence of injury biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0052812 phosphatidylinositol-3,4-bisphosphate 5-kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0016303 1-phosphatidylinositol-3-kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130409-1 Predicted to enable phosphatidylinositol-3,4-bisphosphate 5-kinase activity and phosphatidylinositol-4,5-bisphosphate 3-kinase activity. Acts upstream of or within regulation of collateral sprouting in absence of injury. Is expressed in eye and male organism. Human ortholog(s) of this gene implicated in several diseases, including CLOVES syndrome; Cowden syndrome; breast cancer (multiple); cutaneous Paget's disease; and gastrointestinal system cancer (multiple). Orthologous to human PIK3CA (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha).

Ensembl:

ensembl_id ENSDART00000188223

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008833 lncRNA downstream 130721 34315525 ~ 34358689 (-) True XLOC_004244
TCONS_00008101 lncRNA downstream 234190 34249456 ~ 34255220 (-) True XLOC_004243
TCONS_00008100 lncRNA downstream 263612 34222893 ~ 34225798 (-) True XLOC_004242
TCONS_00008099 lncRNA downstream 263853 34220350 ~ 34225557 (-) False XLOC_004242
TCONS_00008482 lncRNA downstream 496263 33992033 ~ 33993147 (-) True XLOC_004235
TCONS_00008834 lncRNA upstream 32485 34550847 ~ 34577001 (-) False XLOC_004249
TCONS_00008835 lncRNA upstream 919651 35438013 ~ 35441417 (-) True XLOC_004255
TCONS_00008836 lncRNA upstream 1060368 35578730 ~ 35741441 (-) False XLOC_004257
TCONS_00008483 lncRNA upstream 1061495 35579857 ~ 35585628 (-) False XLOC_004257
TCONS_00008484 lncRNA upstream 1146189 35664551 ~ 35741440 (-) False XLOC_004257
TCONS_00008103 mRNA downstream 8588 34401460 ~ 34480822 (-) False XLOC_004246
TCONS_00008104 mRNA downstream 11185 34402416 ~ 34478225 (-) True XLOC_004246
TCONS_00008098 mRNA downstream 256504 34219991 ~ 34232906 (-) False XLOC_004242
TCONS_00008097 mRNA downstream 270199 34201183 ~ 34219211 (-) True XLOC_004241
TCONS_00008095 mRNA downstream 301064 34154593 ~ 34188346 (-) False XLOC_004240
TCONS_00008109 mRNA upstream 36674 34555036 ~ 34577106 (-) False XLOC_004249
TCONS_00008110 mRNA upstream 38940 34557302 ~ 34572202 (-) False XLOC_004249
TCONS_00008111 mRNA upstream 39425 34557787 ~ 34577034 (-) True XLOC_004249
TCONS_00008112 mRNA upstream 61723 34580085 ~ 34628789 (-) True XLOC_004250
TCONS_00008113 mRNA upstream 115030 34633392 ~ 34720629 (-) False XLOC_004251
TCONS_00008105 other downstream 22897 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008102 other downstream 133748 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008088 other downstream 523138 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008078 other downstream 1118043 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008075 other downstream 1751817 32731165 ~ 32737593 (-) True XLOC_004221
TCONS_00008119 other upstream 706660 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008174 other upstream 2781009 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008194 other upstream 3656709 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008207 other upstream 4429625 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008210 other upstream 4571513 39089875 ~ 39089991 (-) True XLOC_004308

Expression Profile

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