RNA id: TU444126


Basic Information

Item Value
RNA id TU444126
length 215
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G375027
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 12584445 ~ 12584659 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAATATCTGTGACTGGCCAGGCCTGATTGAATGTGCTCAGCAAGTGAGACTGGCCTTTGAATGGTTTCGGGCCTTTCGCTTCGGGAGCGATGAGGTCAACGCAGCGTTACAGGCCAGAACAAAGGTTACCACCACGTAGTCGCATTTCTGTGAGCCGCACACCGTAACCCTCTGATCAAATGCCCCCTTTGTCGGCCAGAGAGAAAAGGAACAT

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU444111 lncRNA downstream 23620 12560601 ~ 12560825 (-) True G375018
TU444089 lncRNA downstream 57626 12526620 ~ 12526819 (-) True G375001
TU444050 lncRNA downstream 142906 12441321 ~ 12441539 (-) True G374963
TU444049 lncRNA downstream 146759 12437356 ~ 12437686 (-) True G374962
TU444048 lncRNA downstream 147225 12436772 ~ 12437220 (-) True G374961
TU444129 lncRNA upstream 501 12585160 ~ 12585597 (-) True G375028
TU444162 lncRNA upstream 40472 12625131 ~ 12625619 (-) False LOC113537246
TU444203 lncRNA upstream 111356 12696015 ~ 12697218 (-) True G375097
TU444227 lncRNA upstream 156766 12741425 ~ 12741652 (-) True G375119
TU444229 lncRNA upstream 157661 12742320 ~ 12742520 (-) True G375121
XM_026932144.2 mRNA downstream 6052 12571039 ~ 12578393 (-) False poll
XM_026932142.2 mRNA downstream 6052 12571039 ~ 12578393 (-) True poll
XM_026932391.2 mRNA downstream 14147 12563004 ~ 12570298 (-) False wbp1lb
XM_026932390.2 mRNA downstream 14148 12563004 ~ 12570297 (-) True wbp1lb
XM_034299940.1 mRNA downstream 38022 12536497 ~ 12546423 (-) True as3mt
XM_034300265.1 mRNA upstream 1067 12585726 ~ 12592448 (-) True fgf8b
XM_026932069.2 mRNA upstream 24394 12609053 ~ 12622350 (-) True slc2a15b
XM_034299957.1 mRNA upstream 40392 12625051 ~ 12630403 (-) True LOC113537246
XM_034299933.1 mRNA upstream 59280 12643939 ~ 12656803 (-) False LOC113537226
XM_034299932.1 mRNA upstream 59284 12643943 ~ 12659493 (-) False LOC113537226
trnar-ucu_14 other downstream 1111474 11472880 ~ 11472971 (-) True trnar-ucu_14
TU442843 other downstream 1711899 10871284 ~ 10872546 (-) False lipt1
TU442201 other downstream 2665705 9878843 ~ 9918740 (-) True LOC117596103
XR_004577317.1 other downstream 3977605 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 4152021 8429611 ~ 8432424 (-) False LOC113537606
TU444510 other upstream 724379 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 739423 13324082 ~ 13324173 (-) True trnar-ucu_15
trnar-ucu_16 other upstream 740858 13325517 ~ 13325608 (-) True trnar-ucu_16
trnar-ucu_17 other upstream 741334 13325993 ~ 13326084 (-) True trnar-ucu_17
trnar-ucu_18 other upstream 743393 13328052 ~ 13328143 (-) True trnar-ucu_18

Expression Profile