Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU444129 |
| length | 438 |
| lncRNA type | inter_gene |
| GC content | 0.34 |
| exon number | 1 |
| gene id | G375028 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047620.1 |
| NCBI id | CM018566.1 |
| chromosome length | 19313417 |
| location | 12585160 ~ 12585597 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | description |
|---|---|
| ko04744 | Phototransduction |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU444126 | lncRNA | downstream | 501 | 12584445 ~ 12584659 (-) | True | G375027 |
| TU444111 | lncRNA | downstream | 24335 | 12560601 ~ 12560825 (-) | True | G375018 |
| TU444089 | lncRNA | downstream | 58341 | 12526620 ~ 12526819 (-) | True | G375001 |
| TU444050 | lncRNA | downstream | 143621 | 12441321 ~ 12441539 (-) | True | G374963 |
| TU444049 | lncRNA | downstream | 147474 | 12437356 ~ 12437686 (-) | True | G374962 |
| TU444162 | lncRNA | upstream | 39534 | 12625131 ~ 12625619 (-) | False | LOC113537246 |
| TU444203 | lncRNA | upstream | 110418 | 12696015 ~ 12697218 (-) | True | G375097 |
| TU444227 | lncRNA | upstream | 155828 | 12741425 ~ 12741652 (-) | True | G375119 |
| TU444229 | lncRNA | upstream | 156723 | 12742320 ~ 12742520 (-) | True | G375121 |
| TU444257 | lncRNA | upstream | 247279 | 12832876 ~ 12833354 (-) | True | G375141 |
| XM_026932144.2 | mRNA | downstream | 6767 | 12571039 ~ 12578393 (-) | False | poll |
| XM_026932142.2 | mRNA | downstream | 6767 | 12571039 ~ 12578393 (-) | True | poll |
| XM_026932391.2 | mRNA | downstream | 14862 | 12563004 ~ 12570298 (-) | False | wbp1lb |
| XM_026932390.2 | mRNA | downstream | 14863 | 12563004 ~ 12570297 (-) | True | wbp1lb |
| XM_034299940.1 | mRNA | downstream | 38737 | 12536497 ~ 12546423 (-) | True | as3mt |
| XM_034300265.1 | mRNA | upstream | 129 | 12585726 ~ 12592448 (-) | True | fgf8b |
| XM_026932069.2 | mRNA | upstream | 23456 | 12609053 ~ 12622350 (-) | True | slc2a15b |
| XM_034299957.1 | mRNA | upstream | 39454 | 12625051 ~ 12630403 (-) | True | LOC113537246 |
| XM_034299933.1 | mRNA | upstream | 58342 | 12643939 ~ 12656803 (-) | False | LOC113537226 |
| XM_034299932.1 | mRNA | upstream | 58346 | 12643943 ~ 12659493 (-) | False | LOC113537226 |
| trnar-ucu_14 | other | downstream | 1112189 | 11472880 ~ 11472971 (-) | True | trnar-ucu_14 |
| TU442843 | other | downstream | 1712614 | 10871284 ~ 10872546 (-) | False | lipt1 |
| TU442201 | other | downstream | 2666420 | 9878843 ~ 9918740 (-) | True | LOC117596103 |
| XR_004577317.1 | other | downstream | 3978320 | 8591407 ~ 8606840 (-) | True | tsga10 |
| TU441284 | other | downstream | 4152736 | 8429611 ~ 8432424 (-) | False | LOC113537606 |
| TU444510 | other | upstream | 723441 | 13309038 ~ 13315296 (-) | False | gyg2 |
| trnar-ucu_15 | other | upstream | 738485 | 13324082 ~ 13324173 (-) | True | trnar-ucu_15 |
| trnar-ucu_16 | other | upstream | 739920 | 13325517 ~ 13325608 (-) | True | trnar-ucu_16 |
| trnar-ucu_17 | other | upstream | 740396 | 13325993 ~ 13326084 (-) | True | trnar-ucu_17 |
| trnar-ucu_18 | other | upstream | 742455 | 13328052 ~ 13328143 (-) | True | trnar-ucu_18 |
