RNA id: TU444162


Basic Information

Item Value
RNA id TU444162
length 489
lncRNA type sense_over
GC content 0.35
exon number 1
gene id LOC113537246
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 12625051 ~ 12630403 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tagattTCTGTCTCGATGGATGAGCTGTGTACTCTGTCAAATATCCTTTTTAGATGAACCCATCTTCCAGTAACAGAggttttagataaaaaaaacattcagtgcaATCGAGGTCTGGTAATTAGCTATTGTAACAAACCAAGAGTTCACTAGGGAACATTTTCTGATTAACATTTTTCATCTGATTAAAAACCTCATCAGTCACAAAAGTCTGCACTGTGCATTTCATTCAGCCAGATATGCCAAAAACAAGCAGGGTTCTGTACATCCCTTCATATTAACACCAAATACAAGGTTGAAGTTTACACAGTTTCTTATTTAAGTTGTCAGTTCCACCTTAAATACTGATGCAAACACAATATTGTACCTGTAGAGAGCACTCATTGCTCATTTCTAAAAACATGATCCATGTGCAGAATTGTAAAGCATAAATGAATTTGCTAATTATACATCTTGCCCAAATGTATTATGGTATGAGTTGTTTTCGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU444129 lncRNA downstream 39534 12585160 ~ 12585597 (-) True G375028
TU444126 lncRNA downstream 40472 12584445 ~ 12584659 (-) True G375027
TU444111 lncRNA downstream 64306 12560601 ~ 12560825 (-) True G375018
TU444089 lncRNA downstream 98312 12526620 ~ 12526819 (-) True G375001
TU444050 lncRNA downstream 183592 12441321 ~ 12441539 (-) True G374963
TU444203 lncRNA upstream 70396 12696015 ~ 12697218 (-) True G375097
TU444227 lncRNA upstream 115806 12741425 ~ 12741652 (-) True G375119
TU444229 lncRNA upstream 116701 12742320 ~ 12742520 (-) True G375121
TU444257 lncRNA upstream 207257 12832876 ~ 12833354 (-) True G375141
TU444471 lncRNA upstream 642263 13267882 ~ 13271205 (-) True G375329
XM_026932069.2 mRNA downstream 2781 12609053 ~ 12622350 (-) True slc2a15b
XM_034300265.1 mRNA downstream 32683 12585726 ~ 12592448 (-) True fgf8b
XM_026932144.2 mRNA downstream 46738 12571039 ~ 12578393 (-) False poll
XM_026932142.2 mRNA downstream 46738 12571039 ~ 12578393 (-) True poll
XM_026932391.2 mRNA downstream 54833 12563004 ~ 12570298 (-) False wbp1lb
XM_034299933.1 mRNA upstream 18320 12643939 ~ 12656803 (-) False LOC113537226
XM_034299932.1 mRNA upstream 18324 12643943 ~ 12659493 (-) False LOC113537226
XM_034299931.1 mRNA upstream 18325 12643944 ~ 12656803 (-) True LOC113537226
XM_034299936.1 mRNA upstream 20013 12645632 ~ 12656803 (-) False LOC113537226
XM_026931696.2 mRNA upstream 118642 12744261 ~ 12751839 (-) True pnpla4
trnar-ucu_14 other downstream 1152160 11472880 ~ 11472971 (-) True trnar-ucu_14
TU442843 other downstream 1752585 10871284 ~ 10872546 (-) False lipt1
TU442201 other downstream 2706391 9878843 ~ 9918740 (-) True LOC117596103
XR_004577317.1 other downstream 4018291 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 4192707 8429611 ~ 8432424 (-) False LOC113537606
TU444510 other upstream 683419 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 698463 13324082 ~ 13324173 (-) True trnar-ucu_15
trnar-ucu_16 other upstream 699898 13325517 ~ 13325608 (-) True trnar-ucu_16
trnar-ucu_17 other upstream 700374 13325993 ~ 13326084 (-) True trnar-ucu_17
trnar-ucu_18 other upstream 702433 13328052 ~ 13328143 (-) True trnar-ucu_18

Expression Profile