RNA id: TU444203


Basic Information

Item Value
RNA id TU444203
length 1181
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G375097
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 12696015 ~ 12697218 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGGATGTTTATGATGGGAAGAATACACaatacattctctctctttctctctcacacacacagagacacacacacaccaaatattaCACAGTTGtagcaaatacaaatacaaataaataaggaCGTACTATATACAAGAATTACACAACAGATAAAATCCCACAGCATGAGAAGCACACGGAAAACAACACACTCTTTTGTGTGCTTTAGGGGTGTTACGGTTTGGAATTTGCATGATATGATAACCGAGgcaaaaaaatatcacagttaTCATGGTGATAATCAACCATTTTAACAAAACACAAGCCagggatgaaaatgaaaaggaatatttgtataaatgtctcaaatatctgtatttatcACATTGTCATTATAAGATGAAAGAGAATGGCTGCAAGGAAAAGTGGCGCACTGAGccaaaaaagtattaaattttAATCAGTATGTGGAAAAATATACATTGTGACTAACTGTGAAACCGTAACAACCCTATTGCACTTACAAGGAACTCACACAGAATTGAAAATCAGCACAGCGAATATGAATCGCAATTTGTATAACTGTAATTTGACACATAGTAAAGGTGCATGCCCACAAATCAGGAAGTTATGATGGGGGAACTATACATGCAGTCGCACACCACTTCACGAGCAAAACTTCTCACTACATGCAACACTGGACTTgcagacactttttttaaacacaggttATGCTGAGGTGAAGGTTAACAGTCAGTCTGCTTTGTCGGTTAAGTGCCATTGAAAGAAAGGGAATATCAAGGgataatttttcaaaaaaaaaaaaaaaaacaatgcaaaactcACTCAGGTTATAGTTGCATATCCATTTATGATCATtactttacaattttttttcagttgctgtgttttgtttttaccactatcctttccttttcttctggCTCTCTGGTGGATGGAAATCCTTCGTCGAGAACGTCTGGGATCAAGTAATCGCTTTCATAATTTCCTTCTCCTAACTCTCCCAGAGCCAGATGTTTTCTCAGGGTTCTGATCCTCTCAGTGAATGATCTGTTCAATGTTCTTTGGTTCTTTCTGTTCTGTGTGTTCCTGAGGAGCTGGGTTTGGGGGAGTTTAAGATGGTATGTTCCAGTGTGAGCTTCAGTGCTGTTCTATGACTGACCTCAAATGGTGCTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU444162 lncRNA downstream 70396 12625131 ~ 12625619 (-) False LOC113537246
TU444129 lncRNA downstream 110418 12585160 ~ 12585597 (-) True G375028
TU444126 lncRNA downstream 111356 12584445 ~ 12584659 (-) True G375027
TU444111 lncRNA downstream 135190 12560601 ~ 12560825 (-) True G375018
TU444089 lncRNA downstream 169196 12526620 ~ 12526819 (-) True G375001
TU444227 lncRNA upstream 44207 12741425 ~ 12741652 (-) True G375119
TU444229 lncRNA upstream 45102 12742320 ~ 12742520 (-) True G375121
TU444257 lncRNA upstream 135658 12832876 ~ 12833354 (-) True G375141
TU444471 lncRNA upstream 570664 13267882 ~ 13271205 (-) True G375329
TU444472 lncRNA upstream 570664 13267882 ~ 13271621 (-) False G375329
XM_034299932.1 mRNA downstream 36522 12643943 ~ 12659493 (-) False LOC113537226
XM_034299933.1 mRNA downstream 39212 12643939 ~ 12656803 (-) False LOC113537226
XM_034299931.1 mRNA downstream 39212 12643944 ~ 12656803 (-) True LOC113537226
XM_034299936.1 mRNA downstream 39212 12645632 ~ 12656803 (-) False LOC113537226
XM_034299957.1 mRNA downstream 65612 12625051 ~ 12630403 (-) True LOC113537246
XM_026931696.2 mRNA upstream 47043 12744261 ~ 12751839 (-) True pnpla4
XM_026931697.2 mRNA upstream 47043 12744261 ~ 12751734 (-) False pnpla4
XM_026932068.2 mRNA upstream 610495 13307713 ~ 13320530 (-) True gyg2
XM_034300021.1 mRNA upstream 612204 13309422 ~ 13320530 (-) False gyg2
XM_034300020.1 mRNA upstream 612204 13309422 ~ 13320530 (-) False gyg2
trnar-ucu_14 other downstream 1223044 11472880 ~ 11472971 (-) True trnar-ucu_14
TU442843 other downstream 1823469 10871284 ~ 10872546 (-) False lipt1
TU442201 other downstream 2777275 9878843 ~ 9918740 (-) True LOC117596103
XR_004577317.1 other downstream 4089175 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 4263591 8429611 ~ 8432424 (-) False LOC113537606
TU444510 other upstream 611820 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 626864 13324082 ~ 13324173 (-) True trnar-ucu_15
trnar-ucu_16 other upstream 628299 13325517 ~ 13325608 (-) True trnar-ucu_16
trnar-ucu_17 other upstream 628775 13325993 ~ 13326084 (-) True trnar-ucu_17
trnar-ucu_18 other upstream 630834 13328052 ~ 13328143 (-) True trnar-ucu_18

Expression Profile