RNA id: TU444471


Basic Information

Item Value
RNA id TU444471
length 3294
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G375329
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 13267882 ~ 13271621 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaatattaaaatacagaggtcatatgttttttttttttttaaataaacaacactaGGTAACTCTCAGAGAGCTAAAAGCTCCACACTTGGGGATTTTATGCAAcaatcagggtttttttttctttcagagagTTGGGCATAATATTTTCGAGTTGCCATAGCTATGACTGTCGAACCTTCTTGCAGTGGATTAGGTTGATATGTAGTGGAAGATCCAGCTGTCATGTTCAGTGATTTATCCTGTGTATATTTTTCCCCCTCACTGTAGTCTAGTTTAATGATGaatatacacagtacacactaccaGTCAAACATTAGGACACAGTagattgaataaatatttttacagcagtgtttaaGGCATTTTGCTTGAAATTTGTTTCTGCTTAGTTAGCACATGCATAAATGTATGTTTgaatcaaatgtattttttaataagtagctttaacttattttaaatttgatttaaatttaaatattttcccaaaCAAGTAGTTTTCATTTTAAGCAGGAAGGAGCTCTGACTATTTGGGAACTTTTAAGAAAAGTCTCCTGGGTGAAActcctcatgaagctggttCGGAAGATGTCACGAGTGTGTAAAGCTTCATTAGGAATATTTCTacgaatttaaaatataaaacagtcttgtccaaacttttgactggtaatGAACTATGTGTTGCATAGACTAGTTAGCTAGTATATTCACTAGTTGCCACAGTGGGAGTGTTACTAGTTGGGGCAAtggaaataataattattaaaaaataataataattaaaacaaaaaacacacagaggcaAACAGTAAGGAGATGCCAgataaatgtacataaatgtaCAAATCTACAGCCAAATGCACACTACATTGGGAaacgttttttttcttttgctttaattaatGGAGTGTTaactcttttttcctttctgagcCATGGGTTGCACATCACTACCTAACCACCTCAGCTAGAGTATAGTCAGATCGGCTGCTGAGGCTGCTGTAGACATCATATCCTCCTGCCATCATTAAGCTGTAAGGAGTTTCCGTACCATGCTGCATGTACAACGATTTCAAATCAACGATTTCAGCTGAGCCACCATCTCATACATTTTAAGAACTGGTATGtccttaaatactgtaatattataCACAGATTTACTCTTTTGCccatttattgcactgatttattcaCTTTCATCATTAACAGTGTAGCCTAAGACAGCAATAAAgctgaaatgtattttgtcaCTTGTAATTTGTTGATTCATTCCTTTACTGCACAAATCAAACAACCTATAAATAATGACGTAAAcgttttttgctttaactatggacTAGACGAATTGTTGATTCCTTTTTTGACCTACTGTTCAACTAGTAAAAATTAGTAGTCGTGCAACCTCTGTAGAAGATGTGAATTTGTTCACTCATGAAAGTCCTCACGaagaagaagaagaagaagaggaggaagaactTGAtttagacacatacacacactagcTACTAATTTAACAGTAAACTTAAATCTCACGTCTCTATACAGTGTTTTTATATTCCAGAGTAAAAAGTGATTTGACTGCACCAGTTGCTTCAAACACACTAGtaccatttgtttttttttttttttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacctacatttCAATTTACACATCCTAATATAAGGCCACCTTAGGCAAGTGCTAAAAGTTTAGTTACGTACATGCACTCATTTACAAGAGATAACGAGGACACAAATTCATAAGAGGAACATGAGGACACCGTATTTCTGAGGGTGCAGCAAAACCTTAACATAAACAAAACCTACCAGTTAAAAGTCAAAAAGCACCATAATACATTAACAATTAAAACAGTCaatttttgaccaaaatttgGTAGAGATTATgatagggatgcatcaatacaaTTACTGATATCAGTAAgatactgtgctcatttactcataaaaACCTCATAAAAAATGCCAATACCAACATCCAATACTGGGTGATACTATGTGACATAGGCCTAGTCTATGTTGTTGAATTAATGAACAGACgacacaaaatgacagtgaTCTTAATgtatatgaataatatgaatatatattatgaataatgaTGGCAAAATGTGCTCTGCAAAAACATCAacaggaggaactacagcatcctcctacaaaacacataaaacacacgcAAGCAGAGCgaaaatttcagcttttctcCAGCGTATTGTTTCATGACAATCAGCCACTATCGGTCCTCGGCAACAAGGGATTACCTACTTTACTTACCTCTTTAGGGAAGTGTATTTCCGACGTGAAACAAAACCTGCTCTACGCTGCAACCCTACGATCCGAGGTAACtattgtagctagctaatgcacttcttATAAAATGAACTCACTCATAAAAAACGAGGCTCATAGCGTAAGGGCATGGAcatgcacttgtgcacttttctTGGACACTATTTAATCCAGGGAAAATGAAATAGAGCTAAATAAAAGGTTCTGTGGCGTCTGGATTAATACTatgtaggttactcatttcggTATCAGTATCGGTATCAACAAGCACTAAAAACATGTACTTGTATTtggtctgaaaaacaaaaatcgtattgatgcatccctactATAAGACATCATGTTTGTCATATTACTTGTAGTTTATGataaaaacctttaaataaGAGCAAAGCTGGATGTATAATAAACCATCCGACATCTAGAttgaaaataacattaaaagtgTAACActttgggttctctggttttccaTTTCACATGACTTCATAGCCACACAACGAACATGTCCGAAATGCATTGTTTCCGATAGcttaaactgtaaactgtatcGGACTACTGGCTTCTAGTGTGTTCTTGGCTTAGACACctctgttttggtgttttttttgtttttttttgcataagaAAAGTAGGctcagagaaacagaaataaatagcgCTTCCTTCTCTCTACACTTGATCTtgaggatgatggtgatagTAAACATGATGGCCAATCGTTCTCTATGTTGTCAATCAGGATGTGACAGAAGAGCAGGCTGAGGCTGGCCACCGGCATTGGAATTCCACCGGCATTGGAATGGACGCATTGCACCAGCGGAGGGAAACTTTGTTCcctctttttccattttcaaaagTTCTTGAAAATCTCTAGATCTTTTGGTGACACTGGggtttcttttttccactcGTCCTCAGGGTAGGCTTCAAAGTTAGACGTGTCGCCTTCGTGAGATACCTTAGGAACTATGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU444257 lncRNA downstream 434528 12832876 ~ 12833354 (-) True G375141
TU444229 lncRNA downstream 525362 12742320 ~ 12742520 (-) True G375121
TU444227 lncRNA downstream 526230 12741425 ~ 12741652 (-) True G375119
TU444203 lncRNA downstream 570664 12696015 ~ 12697218 (-) True G375097
TU444162 lncRNA downstream 642263 12625131 ~ 12625619 (-) False LOC113537246
XR_003403790.2 lncRNA upstream 115627 13386832 ~ 13401425 (-) True LOC113537738
XR_003403791.2 lncRNA upstream 115627 13386832 ~ 13399913 (-) False LOC113537738
TU444588 lncRNA upstream 145617 13416822 ~ 13417096 (-) True G375420
TU444627 lncRNA upstream 227438 13498643 ~ 13505565 (-) True G375455
XR_004577351.1 lncRNA upstream 233099 13504304 ~ 13507133 (-) True LOC117596174
XM_026931696.2 mRNA downstream 516043 12744261 ~ 12751839 (-) True pnpla4
XM_026931697.2 mRNA downstream 516148 12744261 ~ 12751734 (-) False pnpla4
XM_034299932.1 mRNA downstream 608389 12643943 ~ 12659493 (-) False LOC113537226
XM_034299933.1 mRNA downstream 611079 12643939 ~ 12656803 (-) False LOC113537226
XM_026932068.2 mRNA upstream 36508 13307713 ~ 13320530 (-) True gyg2
XM_034300021.1 mRNA upstream 38217 13309422 ~ 13320530 (-) False gyg2
XM_034300020.1 mRNA upstream 38217 13309422 ~ 13320530 (-) False gyg2
XM_026932067.2 mRNA upstream 38217 13309422 ~ 13320530 (-) False gyg2
XM_034300019.1 mRNA upstream 38217 13309422 ~ 13320530 (-) False gyg2
trnar-ucu_14 other downstream 1794911 11472880 ~ 11472971 (-) True trnar-ucu_14
TU442843 other downstream 2395336 10871284 ~ 10872546 (-) False lipt1
TU442201 other downstream 3349142 9878843 ~ 9918740 (-) True LOC117596103
XR_004577317.1 other downstream 4661042 8591407 ~ 8606840 (-) True tsga10
TU441284 other downstream 4835458 8429611 ~ 8432424 (-) False LOC113537606
TU444510 other upstream 37833 13309038 ~ 13315296 (-) False gyg2
trnar-ucu_15 other upstream 52877 13324082 ~ 13324173 (-) True trnar-ucu_15
trnar-ucu_16 other upstream 54312 13325517 ~ 13325608 (-) True trnar-ucu_16
trnar-ucu_17 other upstream 54788 13325993 ~ 13326084 (-) True trnar-ucu_17
trnar-ucu_18 other upstream 56847 13328052 ~ 13328143 (-) True trnar-ucu_18

Expression Profile