RNA id: TU445312


Basic Information

Item Value
RNA id TU445312
length 310
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G376038
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 14322184 ~ 14340390 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACAGTGAAAATAACTTATCGGGATGTATTCATAGGATATCACTCGCACAAAGATGATGAAGTTTTGCTGACAGTCCTGACAGtcctttcatttctctttcatgTGCATTTCATCTGGTACCATACGAGCAACACGTTTATAAaggaaatgctttaaaaaaaaacacaaacaaacacatagcAACACATTAAAAGTTTTCTACAAGAAACATACGCGCGAATTCATTCAGTGCTGCAATGCAATAACACCAAGAAATCTTCCAGTGTTTCCccttttataagaaaaaaacaacaaaaaaaaaacccaaca

Function

GO:

id name namespace
GO:0008144 drug binding molecular_function
GO:0019825 oxygen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU445153 lncRNA downstream 47066 14274327 ~ 14275118 (-) False dand5
TU445072 lncRNA downstream 141570 14106222 ~ 14180614 (-) True rnf11a
TU445099 lncRNA downstream 196926 14121498 ~ 14125258 (-) True G375871
TU445091 lncRNA downstream 236743 14078964 ~ 14085441 (-) True G375864
TU445042 lncRNA downstream 348090 13972336 ~ 13974094 (-) False klf5a
TU445324 lncRNA upstream 42818 14383208 ~ 14455469 (-) True G376048
TU445329 lncRNA upstream 45948 14386338 ~ 14387875 (-) True G376050
TU445344 lncRNA upstream 119893 14460283 ~ 14524503 (-) False meis1a
TU445336 lncRNA upstream 121752 14462142 ~ 14466508 (-) True G376055
TU445374 lncRNA upstream 191977 14532367 ~ 14532684 (-) True G376093
XM_026932339.2 mRNA downstream 45647 14274398 ~ 14276537 (-) True dand5
XM_026932202.2 mRNA downstream 74926 14136218 ~ 14247258 (-) False LOC113537614
XM_026932150.2 mRNA upstream 4952 14345342 ~ 14353154 (-) False prdx2
XM_026932149.2 mRNA upstream 4952 14345342 ~ 14353154 (-) True prdx2
XM_026931791.2 mRNA upstream 21074 14361464 ~ 14370687 (-) True ctsh
XM_034299883.1 mRNA upstream 70982 14411372 ~ 14430546 (-) True aplf
XM_026931768.2 mRNA upstream 136148 14476538 ~ 14482864 (-) True etaa1
XR_004577346.1 other downstream 47054 14274817 ~ 14275130 (-) False dand5
XR_003403798.1 other downstream 283198 14038854 ~ 14038986 (-) True LOC113537776
XR_003403796.1 other downstream 283586 14038528 ~ 14038598 (-) True LOC113537774
XR_003403797.2 other downstream 284322 14037731 ~ 14037862 (-) True LOC113537775
TU445045 other downstream 291305 14027294 ~ 14030879 (-) True G375826
TU445430 other upstream 342712 14683102 ~ 14684328 (-) False G376143
TU445400 other upstream 356849 14697239 ~ 14712377 (-) False ifngr1
TU446065 other upstream 1115389 15455779 ~ 15457027 (-) False dpy30
TU446066 other upstream 1115389 15455779 ~ 15458205 (-) False dpy30
TU446067 other upstream 1115389 15455779 ~ 15457083 (-) False dpy30

Expression Profile