RNA id: TU445329


Basic Information

Item Value
RNA id TU445329
length 906
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G376050
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 14386338 ~ 14387875 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cccgggaacacaccctggatgtgatGCCAGTCTGTCGCAGGACACCAtccaaacacactctcactcaaacacacacacacacacaaacatctaacatcaatttagagtcaccaatccacctactgacatgtttttgggaggaaacaaACATGTGaaagaacatatgaaactccacacagacggCAGCCCGAGGTCAGGATCGAACCATGGGCCCTGGAGCTGTCATGTGACGCTACTCGCTTCGCCACCGTGACGCTCAACAGGAATACTgcggtgttttgtttttcatttccatgTCAGTCTGTTCACTTACATCTTCTATAACCGTGCTGAAAGTGGCGAAGGCTGATCACAGATACATTCAGAAGGTTTTCACAGTTTCATCAACATGGAACATTCTCAAGCCTCCAGACAAAGTGCATTTCTTTTACTTCACTAATCCACTGTAAGTTCTCGAGCTCCGTGAGCAACAAACGCACATGAGCGAGCCCTGAAACACTCACCATGGGTTTGTTGTAGAACGGGAAACCTTGCAGCTGTCTCAGTGCGTTCGTCGCTGCAGCAAGTTCTTTAAACACCACGAACGCCTGGCCTCTCATTTTCATGGTCTTCATAGCGACGATCTCGACGATCTGGCCGAACTGAGAGAACAGGGCGTAGAGAGACCTCTTCAGCTCTTCTTTCTTCACCCTGTCGTTCAGGTTGTTGATGTATATCGTGTGATTCGGTCGTATGTCCATGTTGCTTTTCTTTCACCTGCGATTATTGAAGATGAAAGATTCAGTACAAGCcgtaaaattaatttaaaaacaacaacatgttcAAAACATTGAACAAACAAACCAGCAACATTTAACTAAACCCGAACTATCATTACtacaatgaatgaataagtcTCAAACTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU445312 lncRNA downstream 45948 14322184 ~ 14340390 (-) True G376038
TU445153 lncRNA downstream 111220 14274327 ~ 14275118 (-) False dand5
TU445072 lncRNA downstream 205724 14106222 ~ 14180614 (-) True rnf11a
TU445099 lncRNA downstream 261080 14121498 ~ 14125258 (-) True G375871
TU445091 lncRNA downstream 300897 14078964 ~ 14085441 (-) True G375864
TU445344 lncRNA upstream 72408 14460283 ~ 14524503 (-) False meis1a
TU445336 lncRNA upstream 74267 14462142 ~ 14466508 (-) True G376055
TU445374 lncRNA upstream 144492 14532367 ~ 14532684 (-) True G376093
TU445412 lncRNA upstream 270071 14657946 ~ 14661311 (-) True G376127
TU445429 lncRNA upstream 294512 14682387 ~ 14684328 (-) True G376143
XM_026931791.2 mRNA downstream 15651 14361464 ~ 14370687 (-) True ctsh
XM_026932150.2 mRNA downstream 33184 14345342 ~ 14353154 (-) False prdx2
XM_026932149.2 mRNA downstream 33184 14345342 ~ 14353154 (-) True prdx2
XM_026932339.2 mRNA downstream 109801 14274398 ~ 14276537 (-) True dand5
XM_026932199.2 mRNA downstream 181881 14136218 ~ 14204457 (-) True LOC113537614
XM_034299883.1 mRNA upstream 23497 14411372 ~ 14430546 (-) True aplf
XM_026931768.2 mRNA upstream 88663 14476538 ~ 14482864 (-) True etaa1
XM_034299926.1 mRNA upstream 88663 14476538 ~ 14482657 (-) False etaa1
XM_026931769.2 mRNA upstream 89210 14477085 ~ 14482864 (-) False etaa1
XM_026932003.2 mRNA upstream 100919 14488794 ~ 14524516 (-) False meis1a
XR_004577346.1 other downstream 111208 14274817 ~ 14275130 (-) False dand5
XR_003403798.1 other downstream 347352 14038854 ~ 14038986 (-) True LOC113537776
XR_003403796.1 other downstream 347740 14038528 ~ 14038598 (-) True LOC113537774
XR_003403797.2 other downstream 348476 14037731 ~ 14037862 (-) True LOC113537775
TU445045 other downstream 355459 14027294 ~ 14030879 (-) True G375826
TU445430 other upstream 295227 14683102 ~ 14684328 (-) False G376143
TU445400 other upstream 309364 14697239 ~ 14712377 (-) False ifngr1
TU446065 other upstream 1067904 15455779 ~ 15457027 (-) False dpy30
TU446066 other upstream 1067904 15455779 ~ 15458205 (-) False dpy30
TU446067 other upstream 1067904 15455779 ~ 15457083 (-) False dpy30

Expression Profile