RNA id: XM_026932028.2


Basic Information

Item Value
RNA id XM_026932028.2
length 4010
RNA type mRNA
GC content 0.42
exon number 7
gene id ifngr1
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 14697239 ~ 14712646 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACCTGAGATTCCACTTGGACTGAAACCATCAAAtcgttttgttttggtttgtttttttttattaaaaatgattcgGTGTTGAGATGGTATAGTGCTGGATTAAACACGAGCTCAGATTAGTGTCTCCACGTTACCGGGTGCGGTGATGTGCGGGGTAGCACGCGGAAGTGAGGACACGTGACCAATCATCAACAACACCTTTacaaacagagagtgagagagagaggaagagagagtgagagaaagagagagagagaaagagagagagagagagcagagctgCTGCGTCTGCGTCTGCATCTGCGTCTGCGTCTCCTCAACACCAAGCCAAGTGGATTTATTCTGAGTCTGATCGCCTTTCTGGATAACTAGTACAATGCCATCGCTTCATCCgtgcttatttatttagtgtggAATGAGAGGAACCCATGCCTGAGTGAGAGTACCGGTGAGCTTCAGCTTGGCACGATGCGCCTTCATATCCTCGGGATTGTCACTGGATTTACTGTCCTGAGTGCACTCAGAAGCCTTACACATGCTGTTCCAGCTCCGTTCGATGTGTCTGTAAAGTGTGACAGTTATGGAGTCGTGGTGGAGTGGATGGCTGCTGGTCTCAGTGAACAAGCTGAGTTCCTGTTAGAGCTCAAACCAGACTTTGGgaaaaacatttctgttagTACAAAGTATCCTCGATACAACATATCTGACCTGCTGCTGGATACGGCGTACAACCAGTACTTTGTGAAGGTGAAGGCCAGAGATGGTGAACATGAGTCTGAGTTTGCAGAATCACAAATATTCTCTTTCAATTATTTGAAAGAAGTAAATATTACCTGTGGCCTTGAGTTCCCCACAGTTAACCTGTTTCCTCGAGACGGGAAGTTGTTTGTTGAATTCATCAACCCTTTGCACCTGTACAGAAACACACCTGCTCTACGCAATCTCCGGAAAACTGAAACACTAGAGTACACTGTCACTACACTACAAAGCCACAAGATATCTCATGAATCTGCTTGCTCTATCGAGTCGGAAAAGTGTGAGAGCAGCGTGTCATTCCCAGAAGAGCAAGAGAAATACTGCATCAAACTCCTGGGAAGGATCAGACAAACTCATGTATGGGAAACAGAACCTTACTGTCACGAGGGCACCCTTAATCCTGGTCCACCCATCACCGTGTACCTCATCCCAGTGCTGGTGGGTTTTGCAGTGTTTCTTGCTTTGACATTGGCCACTGTGTTTCTGGTGAAGGAAATcaataagaaaataaaggaGCAACACCTTACCAAGTTACCACTATCTCTGAAAACCAAGCTGACATACATTCCTGTGAACACACCTGAAAATCCCAACGTTGAACCGGCTGTCAACATTTCCACAAACAGTACTTACAACTTCCAAGAAAGCATCACCCAGTCGGAAACCACCACCAACAGCGACATCACCACAGACTGCACTGAGGACGAGGACGTGCATAAAAGCTCAGGAAGCAGCGAACTGGAAGCAAGCTCTTCCCAGGAAAGGTTGTACGGGACCGGAGCAGAGCTGTCGAGCAGTGACTTGTCTACGGGTTACGACCGGCCACATACACTCATAGAAATGAGCCCTGAAGACAAGGTGAAAAATTATGGTAGCTGATAGGGATTGTTTGGGACCTTCATCAAACACAGCGATACACATCTCATGTTCCAAGATGTCAGACAGACAACAAAAAGAGATGTCATGGAGGAGagaatgtaaataatgtgaatAGCCACAGATCTACATCAGGtgtttttaattgcttttttaaaaaaaaaaaaatcatctctcATCTACAGTAATATTTAATCTAAAGCCAGTACAAAGCTATTCTCTGAAGTAAGTAGACCAGCAGGACTGACACTTTCAACATTCCAGTTCTCCATTCAGTTTCTGTCTTAACACACTAAGGCATTAAGGCTGTTTAGCACCGACTGTCAGCCTCAAGCAATTCACGTGCTTAgatatgtatattaaaaaaaatacatgcactAATGGCTCAGGGTGCTCAGGGACTAAACCAAACCTTGTGGTGTTATTAGATAATTAGATATCTGACACTATAACTGTTGCAAGAGTGGAAAGTGACAAACAGCAGGTACTCTAATTACAGTAAGCGACTACATGATTGACTgtaactacttttttttttaggataatTAAAATAACTTCCATTGATCATTTAACATATCAGATGAACCCCTGCTGAAAGTCTACTTCAGGTGCCAAATGCTTAGCAGcagtgtctgagacagtggagacagatctGCTTCCCTGGCACAATTTATCAGCTGTAACAGCGTGATGATCAGCTGCAAAAATACGCAAGAAACACGCAAAACCTGCGGAGATATCGGCAttagactagctagccagatcttttgatattttacagtatgaaagctctgAATTAAACTTCGATGTTCGCTAGCGATtgcctgttgtgttaaatatatcgAAGCGCCATGCTTAGCGCAGCATGTAGGTACTGTGTAAAGGGCATCTTTGCGAGATAGCTAAGTATGAaataacatgagctagctatcTTGTTAACAAACCTAGCAAGATACTGAAACTCCAACAGAatttggctagctagctaacattacctttatttatataattgtgtttattcttcagatacagaacattttcagattGTTGGGTCAATTatagacttaaaaaaaatacatttaattttttatattgattACTTGTAGTTTTACGCAAGtaaattattactacagtagcagtgCTTTTACTTTTAaggcagtgtgtttttttgtactCTGTGTACCATGTTGCCATTTTGTTATTGCTCATTAACCTAAAAAGCTGCTGCTCCCTGGTCGCTGTATCAGGACGCATCAGGTCAGAGCTGGATCTCTCTATAAATAAGCAGCAAACTGGAAGGCATGCTTGAATGTCAGGGTGTAATATAAATGGGCGCAGCTTTATGATTGAGATTAAAACAGGGACAAGGTTCACAGATCACATGGTGTCATAATGCAACGTTTGAGTACGGAGCAATTTGGAGTGAAGCTGAAGTTAAGTTTGCTTTCAATCTGGAAAGCAAAACATCGAAAAATCCTGTACATCTCTAATGTccagaaaaatgaagaaagattgttttatttttttattcgtttatcTATACACTCTTAGGGAATAAAcggtgttttcacactttttttgaagaaaatgcTGACCCGAGTGCTTTTTGTACTGATATCAGACAAGAAAATCACCTCACCCGACAATGTATGcactgtaaccatagcaacctTCTTACCAGTCTTGGCTAGTTTCGGCTAGCCGAGTTTGCTgtatacataaaaaatgttaaaataaagacTGTGGTGACAAGGAGGCTGTTTGCCTTCAAAAAAATCAAGAGACTGATAAGAgaatgtgagctgtgtgtgtgacttgacTGTTTGCAGCCACGGTTAAAGTTGGACGTCACATCACGTACTGGTGAACGTTCCAAAAATAAacgttattttttttccaccaggactttgtcctccatgttggtTCCCCCCAGTGCTGAAAAGTGCTTCTGCCCATTTCTGAAAAGTCGCTTACCTCcagtaagaaaaacaaacacctcGTTTCAGCAGGTAAACCGAGCACTGGAGGTGGAGTGGGAAAGCACCCTAAGGGTTCTCCAGCTGTCCTTCCGGGGAACCTCAAAAGCTGTATATTGAACCCTGCGAGAGTGTGTTTCCTAGTCAACAAGATCTGGGTCATTCTCAAAATATGGTGACTTTCTACAGCGAAATGGTCAAATTGTGAATTTTCATATTCTGTTTAGAAATCGTGACTAatgaaagcctttttttttttcgaaagaATAACCAATGTTCCTGATCTTTAATGTGGTGCCATTACTTTAGGTCACTGCAGTAATGAATTGTCATTGGTGTCACAAGCACGAGCTGTTACAGCAGTCACAGTAACTCTTTCCATTAAAGATCTTTTTCCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU445429 lncRNA downstream 12946 14682387 ~ 14684328 (-) True G376143
TU445412 lncRNA downstream 35963 14657946 ~ 14661311 (-) True G376127
TU445374 lncRNA downstream 164590 14532367 ~ 14532684 (-) True G376093
TU445344 lncRNA downstream 172771 14460283 ~ 14524503 (-) False meis1a
TU445336 lncRNA downstream 230766 14462142 ~ 14466508 (-) True G376055
TU445465 lncRNA upstream 26723 14739369 ~ 14739807 (-) True G376171
TU445467 lncRNA upstream 26834 14739480 ~ 14739807 (-) False G376171
TU445468 lncRNA upstream 27615 14740261 ~ 14741549 (-) False b3gnt2a
TU445642 lncRNA upstream 198121 14910767 ~ 14961052 (-) False akt3b
TU445691 lncRNA upstream 322519 15035165 ~ 15035466 (-) True G376364
XM_026931764.2 mRNA downstream 55820 14586194 ~ 14641454 (-) True mast1a
XM_034299962.1 mRNA downstream 118056 14569640 ~ 14579218 (-) True atg4da
XM_026931702.2 mRNA downstream 118057 14569640 ~ 14579217 (-) False atg4da
XM_034299964.1 mRNA downstream 118905 14569640 ~ 14578369 (-) False atg4da
XM_026931754.2 mRNA downstream 130188 14554491 ~ 14567086 (-) True actr2a
XM_034300025.1 mRNA upstream 19929 14732575 ~ 14737860 (-) True zgc:66455
XM_026932118.2 mRNA upstream 19929 14732575 ~ 14737859 (-) False zgc:66455
XM_026931643.2 mRNA upstream 27486 14740132 ~ 14749734 (-) True b3gnt2a
XM_026932393.2 mRNA upstream 38384 14751030 ~ 14760038 (-) True commd1
XM_034299884.1 mRNA upstream 74473 14787119 ~ 14851953 (-) True usp34
TU445430 other downstream 12946 14683102 ~ 14684328 (-) False G376143
XR_004577346.1 other downstream 422144 14274817 ~ 14275130 (-) False dand5
XR_003403798.1 other downstream 658288 14038854 ~ 14038986 (-) True LOC113537776
XR_003403796.1 other downstream 658676 14038528 ~ 14038598 (-) True LOC113537774
XR_003403797.2 other downstream 659412 14037731 ~ 14037862 (-) True LOC113537775
TU446065 other upstream 743133 15455779 ~ 15457027 (-) False dpy30
TU446066 other upstream 743133 15455779 ~ 15458205 (-) False dpy30
TU446067 other upstream 743133 15455779 ~ 15457083 (-) False dpy30
TU446479 other upstream 1204982 15917628 ~ 15920553 (-) True G376956
TU446429 other upstream 1220991 15933637 ~ 15942686 (-) False khsrp

Expression Profile