RNA id: XM_034299872.1


Basic Information

Item Value
RNA id XM_034299872.1
length 6094
RNA type mRNA
GC content 0.43
exon number 15
gene id akt3b
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 14910662 ~ 14961052 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTTCTCTCTGCCAGCCTCGCCTGCTGTTGGGTTtgtgatctatctatctgtctagcTGTCTATCTCAGCGTCTGTGTAGCTCTCCGTTCCCGTTCAGGGTCATTCGGTTCATCCGGTGCTGAGCGCGAGCGGCGATGGCGACATCACGGCCGTCTTTCTTGCTTCCGTTTTGCTCGTGACCAGCTGGAGgattcttcaaaaaaaaaaaaaaaagaaagaaagaaagaaagacgcATTAAACCGTGGAATAAAAGGAGAGGGTTGACAGCGGAGCCCGGTACTGAAGAAGGGAGTGTCGGAGTGTGTCGGAGTCGGAATCGGAGTCGGGAGTCGGTGTCGGTGTCGGCTGAGTCACCCACCGCCGGAGCGCCCGAAGGGTCCCGCACGCAGGGAAAGCAAGACTCGGGGAGGGACGTGGTGAACAAGTGAGCAGACGCTGAAGCGTAAAAaacaggaggagaagaagaaagagagagagaaaggaagcaCGGTGGCAGGGGTGGAACGAGCGACCCTGAGAGAAGAGGACGAGCACTGGGCTCCCCCCTGACCCCTAAACCCCCGAGCTCGGAGTCATCATGAACGACCAGAACGTGGTGAAGGAGGGATGGCTGCAgaagagagGAGAGTATATAAAGAACTGGAGGCCACGATACTTCCTCTTGAAGACGGACGGCTCCTTCATCGGCTACAAGGAGAAGCCCCAGGACGCAGACTTCGCCTACCCGCTCAATAACTTCTCTGTGGCCAAGTGTCAGCTGATGAAGACGGAGAGGCCGAAGCCCAACACCTTCATCATCAGATGCTTGCAGTGGACCACTGTGATCGAGCGAACCTTTCACGTGGACACACCTGAGGAGAGGGACGAATGGGTGGAAGCGATACAGATGGTGGCGGACAAGCTGGCCaagcaggaggaggaaggaaTCCTGTGCAGCCCCACCACCCAGATCGAGATCGTCAACGAGGAAGAGATGGACACCTCCATCAGCCACCATAAACGAAAGACAATGAACGACTTCGACTATCTGAAGCTGCTGGGCAAAGGCACCTTCGGGAAGGTGATCCTGGTGAAAGAGAAGGCCAGTGGAACTTATTATGCAATGAAGATCCTGAAGAAGGAGGTCATTATTGCCAAGGATGAAGTGGCCCACACTCTGACTGAAAGCAGGGTATTAAAAAACACTAGGCATCCCTTTTTAACCTCTCTGAAGTACTCCTTTCAGACCAAGGATCGTCTGTGCTTCGTGATGGAGTATGTCAACGGCGGAGAGCTGTTTTTTCATTTGTCAAGAGAGCGCGTGTTTTCGGAAGACCGGACCCGTTTCTACGGCGCCGAGATCGTCTCTGCACTGGATTATTTGCACTCTGCTAAAATTGTTTACCGCGATCTTAAGctggagAACCTGATGCTGGACAAGGACGGCCATATTAAGATCACAGATTTCGGCTTGTGTAAGGAGGGCATCACTGATGCTGCCACCATGAAGACGTTCTGCGGAACTCCGGAGTATCTGGCACCTGAGGTGCTGGAGGATAACGATTACGGGCGAGCGGTGGACTGGTGGGGGCTCGGCGTGGTCATGTACGAGATGATGTGTGGACGCCTTCCCTTTTATAATCAGGACCATGAGAAGCTGTTTGAACTGATTCTTATGGAAGAAATCAAATTTCCCAGAACCCTCTCTGCTGATGCCAAGTCTCTGCTCTCTGGCCTGCTCATCAAAGACCCTAACaaaagGCTGGGAGGAGGTCCGGACGACGCAAAGGAGATCATGAGACACAGTTTCTTCTCTGCGCTGGACTGGCAGGATGTTTATGACAAAAAGctcatTCCGCCGTTCATGCCCCAGGTCACGTCTGAGACAGACACCAGGTATTTTGACGAGGAGTTCACAGCTCAGACCATCACGATCACCCCTCCGGAGAAGTTCGACGAGGACGGCATGGACTCGGCCGACAGCGAAAGGAGACCACATTTCCCACAATTCTCGTATTCAGCCAGCGGGCGGGAGTGAAGCTCGCTCGTTAACCGGCACCAGTGTTTTCATCCGAGGCCATTTAAGGAAATTACGTAGCCATGCTAGGAAAAGTCTGCACTCTTtccccttctcctcctcctcctcctcctcctcctgttttctctttaattatttaatgactTGGGgaagttttcattttgttttgttttgttttttttttttccaattttatttttgatgttgGGAAAAAGGGGTTTTGCACAGATGGGTCCGACTGAACCTAGTCAAcccacataaaaaaagaaagtcttgtacattttcagcattgttgttgtttacagcAGATCAAgaacagttttttgtttttgttttatgttggtttttttttcagtgcattaAATTATGTCCATCAGTATTACCATTGACGTTGAGCTTATaggtttgtttgttgtgttttttttttggtttttttttggtgtatgTGTGCTTGTTTTAAAGAGCCGTTCTGGggaacaaaaccaaaaatgttGCCTTATGTGTGCggacagacagacggacggacggacggctggacagagagacagggttCTTGGCTCGCAAAAAACTTTTCTTATCTTTATGTTTCTGCATCGCACTGTATAACATGTTCCACCTCTCGCACTCTGTGACACTGCGGGGGAAATGTGTACGAAAGAAAGACACtaaggtttattatttttttgttcaaaagGGAAAGATTTAATTTACAGTACGCAAAACTGCCAGTTACCATAACGTAAACCTTACTCAGGCGACGTCGAGCACAAGCTACTCAAACCAGAccgagacagacagagagacagagagagagagagacggagagagagagagatggagagagacagagatgtggGAAGGTTTGAGGTGGTTTGCTGTTAAACACAACTCAGCTACAGTATAGACAGAATGTCAGAGCACTGATCTGGGATCAGTTTTTCACTTTCCTGGAGGAATATCCTCCTCTCTCATGCACAtgcagttgagtgcaaaagtttgcaacCCCCCGACCCACTCACTCACGGAACCTTAACCTTAACTCTAGGatcctcctttttcttttaaaagaaaagtatttcacattttatctaAAGATAAAATCATTTCAAGGTGAAATTACTGAAACCAAAAGGTGGGTGTGTGAACAGAAAGGAAAGAGCTAGTTCTTCCAGTGTTACAGCTGCGAGGATGCAGGAAGCTGCTTTACAGATAGAAAAGAGGTTCTAAAGGCGAAGGGTGGAGATGTGGTCTGTGTACGTCGCGTCCACTcgtttattcatttggaaatGAAAGATCGGAAAACGAGCAATGAAGCTCTTGACactaaaacaggaaatgaattcattttttatagaattatttaaaaaaaaaaaaaaaaaaaaactctttttagTTCCTTCTGCTAGTTTCACGATATAAAGTCTAGAAATcaaatgttcattaattaaaatatggggaaaaaaccTGCCACTGCAGTACATTTCAGCATGAACAGAGTCGAGCTGGAAGTACGTCGGCTGTTCTACATGTTCTGTTCTCTGGTTAAGATGTGTTAAGAATTCTGTtttccttcaccatcaccctcgtGCTACATTTAAAAAGTAGCACAGTGACCAAGGTCACTCAAGATCGTTTATTAATATTAGCTCCAACCCgaatctgaaatgatgaaaaacaagtgACAGAGAAATAACATGAGGGcgttttgtaatatttattattttaaagccaAGAACAGATTTGCCCATCTCACTTGCatatgataattattttttaaaattctgaaatgaaaaatgaatgaacacaacGTAGGCAGAccagatgttaaaaaaaacttataaccttattattattatttttttaaaaacttgtgataatgaaggaacatctggaGAAACTTTAAAAATCTTCTAAATTTCATTATGTTCTCTAaaggtgtacaaacttttgcactcaactgcaCGTACAATCTCGGATATTGAACGTAGTCAAGATATCGATGAAAACCTGATCCTGGATCAGAGCAGCTCTGTTTATCAGAAGTTTTATAGTCATTTACAAAagtatttaacaaaaacaagagTGGAAAAAATACaatggaaataaatacataaataatatttgtagataatatattaaatcatatataatgaattataattatgACAATATATAATCCGGGCAGTGTTGTAAAAGTCCTGGCGATGCCTGTGATACTCTGGGAAAGTGTATTGCGATGAAAAGTATCACGATATCGACATCACGTTGTCCCATCGtccagcactgacacacacccgGTAGCTATATGTACAGAAACCTCACTACAGATCAGCGCTGTGATTACACACACGCGTTTGCGCGTGTGCCGTGACAGAAGAGCGCTCATGCGTACGCCGTTACACACGTGTGCTTGTGCGTACGCTGTGTTCTGTAAAAtcctaaaaagaaaaacaaatcgaGGATCAGCTCTGATCAACTAACCACACAAGCTTCTCTTTTCACAACACAAATCTTACTCTtactttgatttgttttttttttgttgttgttgttgttgttgttttggcatTACCCAGTTCAGTTTAGATGAAAGAAAGTGACCAacagtgccctccagaattattggcacccttcaaatGTGATATTTCGAGCTCAAATCTACAGGGACATCGTCATCATAAAGGGATTTTACACGTGTGCAACTGCAAATTCACTCCCCAGGGAAACAGGGCCTGGTTAAATGTAACAACGGAGTTCCTGGAGGCTGagaggaagattttttttttttttttaaaggaatggCAATCATTTTGGCAACCCgaggaggatgaaggctaacactTGTTTCTTTTGAGACACGTGAAATcagccacatcttttcaaacagcTTACAGAGCAGCGCTGAAGAAAGCGTCATcggccctcttctgcatacatgagctcccAGGCCCCTGTGATCAGCtagtgattgacaggagagagagagagtaggccCCTCCCACTCACTGACAGAGCACTGACGATTTTGCTCCTTTGGCTCGTGATCTCCTGTTGCACTGATTGCGAGCCGGCaaatatgtagtttttttttttaatatgagaaCAATTGAATGGAAAGTTTTAATTAtggtgtaatatttattttatacagtcatTTTTTGCTCGTTTTtatgaaaggtgccaataattctggagattACTGGATGATGTTGGCATGGCAATCAAAACCCAGATCAGATCACCTTCACCCAAAACGACTGAAGACCAAGGCTGTgtccaaaatcacttaaaaatacacTATTCAATAAAGATGATTCCCAGGCCCAAATGTAATGGCACCCCTGCAGATCAGTGCACTACATACTGTGTAAAATAATGGCCTTTACTATATTCCGTATATAGCGTTTTACTGTACGAGTGTTACTGTATTGTACCAATCCACAAGTTTCGTGCGGTAATATGTGGTTAGCGATACAGCTTCAGACTCGTCCAATTCGTCCAATCCGACCACTCATGTGATCTAAATATGCAATGGCGTCTATTTCTTTTGTCACAGCAGACCTGTGTCTTATTGTTAGAAACGAAAACAATACTTAACAATAATTTGaaacaaaagacagaaaaacatttccataGATTCTGTGGTATTTAAGTCCCGCCTCTTTTATATCCGCACCAATGAGATGTGGAAGTTcgattttaaaattgttttctttctgtaatGCTGATTTTGCTAACAATGAAGCTACATCAGGTTTTCTAAACGTTGGTATCATGAGACTTTTCCCCCCTCAGTGTATTTTTGTACCACAGTTCTACTTTTCGCCTACTTACGCCAACGTTACGCTCCGTCTCTCGTTCTTGTGTGACGAAGGTGTGTCGTTTTATGAAAGAAACAAAGGATGCGTTATGAATTTCGTTTTTGTTCTTCAATTCCACTTATTAAGTTGTTctgttggttttgtttgttttgttttgttttgtttttaaataccAAAGCGATGCGGCAGGTTTACAGTCAAATGTCCTGCTTTATTGCTGTTtggtaatatttattttaagttataataaaat

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU445468 lncRNA downstream 169113 14740261 ~ 14741549 (-) False b3gnt2a
TU445465 lncRNA downstream 170855 14739369 ~ 14739807 (-) True G376171
TU445467 lncRNA downstream 170855 14739480 ~ 14739807 (-) False G376171
TU445429 lncRNA downstream 226334 14682387 ~ 14684328 (-) True G376143
TU445412 lncRNA downstream 249351 14657946 ~ 14661311 (-) True G376127
TU445691 lncRNA upstream 100662 15035165 ~ 15035466 (-) True G376364
TU445961 lncRNA upstream 110209 15044712 ~ 15045359 (-) True G376574
TU445990 lncRNA upstream 164513 15099016 ~ 15101012 (-) True G376602
TU445995 lncRNA upstream 183009 15117512 ~ 15117893 (-) False triobpa
TU446002 lncRNA upstream 197514 15132017 ~ 15132290 (-) True G376608
XM_034299864.1 mRNA downstream 12520 14890222 ~ 14898142 (-) True cct4
XM_034299865.1 mRNA downstream 12520 14891306 ~ 14898142 (-) False cct4
XM_026932333.2 mRNA downstream 21753 14880246 ~ 14888909 (-) True fam161a
XM_034300308.1 mRNA downstream 32078 14855572 ~ 14878584 (-) False xpo1a
XM_034300307.1 mRNA downstream 35997 14854881 ~ 14874665 (-) True xpo1a
XM_034300028.1 mRNA upstream 19058 14953561 ~ 14958201 (-) False LOC113537617
XM_034300027.1 mRNA upstream 19058 14953561 ~ 14958197 (-) False LOC113537617
XM_034300026.1 mRNA upstream 19058 14953561 ~ 14958197 (-) True LOC113537617
XM_026932137.2 mRNA upstream 126418 15060921 ~ 15072345 (-) True spast
XM_026932138.2 mRNA upstream 126418 15060921 ~ 15072344 (-) False spast
TU445400 other downstream 198285 14697239 ~ 14712377 (-) False ifngr1
TU445430 other downstream 226334 14683102 ~ 14684328 (-) False G376143
XR_004577346.1 other downstream 635532 14274817 ~ 14275130 (-) False dand5
XR_003403798.1 other downstream 871676 14038854 ~ 14038986 (-) True LOC113537776
XR_003403796.1 other downstream 872064 14038528 ~ 14038598 (-) True LOC113537774
TU446065 other upstream 521276 15455779 ~ 15457027 (-) False dpy30
TU446066 other upstream 521276 15455779 ~ 15458205 (-) False dpy30
TU446067 other upstream 521276 15455779 ~ 15457083 (-) False dpy30
TU446479 other upstream 983125 15917628 ~ 15920553 (-) True G376956
TU446429 other upstream 999134 15933637 ~ 15942686 (-) False khsrp

Expression Profile