RNA id: XM_034299886.1


Basic Information

Item Value
RNA id XM_034299886.1
length 1799
RNA type mRNA
GC content 0.53
exon number 13
gene id triobpa
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 15117512 ~ 15129256 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacacacacacacacacacacagagagagagagagagagagagagagtcagataCCATGATGTGGGAGGTTTTGGTGTCCAGTTTCGGGTTCAGGCAGAGCTGTCTCACTATTCAGCTTGGAAAATGAGCTACACAGAGCACGGAAGTCACGTGACTAGTTGTTCGAGACCAGAGTGGCTGCGCTCCAAAACCGCAGACAGAGGGCTATACTATACGGAAACTGGGTCGGCGCATAACAACTTCAACTCTTCCTGTTTCATGCCTTCAACCGGCTTACATTATTCAACGATGACGCTCAACTCTTTGGACCTTAAAAAGGGATGGATGTTCATGCTGGACAACTGCGCAGAATGGAGAAAGTTCTGGTTTGTGCTGGACAGCTCTGGACTGAAATACTATACCAACCCTGATGCTGAGGAGagGGCTGAGCCAGATGGAGAGATTGATATTTCATGCTGTCTAGAAGTGGTGGAGTTTGAAGCGGATAAGAACTATGGACTTCAGATACATATGAGAGACGCAGAAATCACTCTGTCAGCCATGACTTCCCGCATCAGGAGGAACTGGATAGACATTCTGCAGAGACGCATCAATACCACTGAATCACCCGATAACGCACGACACCCAGACAGCACCAATGCCACCTCCCGAAATGCAGAAACCTTCAGGTTCTCACATCGAGATCGACACGATTCAGGGTCAGAGCCCACAAGCCCGTCTCACGATGACCCAGACATGATGTCATTGCCCTTGACCAATCACCGGGAGGCAGGCGTGGGTCGAGATACGGAACAGGAAAAGCGATTAGGGGACAGGACTAAGTGGTTCCAGGAAGGCGTCTCGGACAGAGAGGCCGACAGCCCATGGGACAAAGTGCAGCTGAAAAAGGGGGCGGTGGCTTGTGTTATGCCGCAGATCCCCGAGACCATGACGGGGACGGACATCGAGAAGAAGTGGGAGGATTTTGAGAAGATTCCTGTAGGGGAGATGAGGTCTTTATCTCTGATTGGCTCAGAGCCTCCACAAGGAACCAATGAGGCGCTACAGAGTGAGGTGATGTCTCTGAGGCAGCAGATCGAGGTGCTGCGTAAAGGCCGAGCCGCGTCTAAATCTGCGGTTTCCTGTGGCCCGGGGTCACCCTGTGCCTCCAGACTGGAAGAGTTGGAGAGAGAGCACAGGGGGAGACtgcaggagatggagagagtgcatgagagagagatgagagagatggagactcAGAGAGAGCAGATGCTGAGAGAGGAGGCGCACCATGCGGCACAAGCGATAGATGCTCTGAGAAAGGCCCAtcaggaggagctggagagagtgagaggagggGAACAAACAGATTCCACTGTACTAAAgtccGAGTGCGTCTCTCTGCAGCAGGAGTTGGATGGTCTCTCAGAGCGTTACACTCAGAGGTGTGTGGAGCTGACTCAGTTACAGAACGCCAcaggacagagacacacactgatcGAGGAGAGGCACAGAGAAGTGGAACAACTCCGCAAAGAGAACCAGGAACTGCAGGCACGTCTGACTGAAGAAATGAGCCTCATGCGATCCTTCATCACGGGTCAAAGGTCAGGGGTCATTGCTGTCGGAAGCTACGAGCACAGCGCCTCAGAATTGGAGgagaagCAGGAGCTGAGCGAGCGTTACAAGGCCGTGTATGTGGAACTGTGTGGACTGAAGGGGCTCAGTGACAGAGAGATCAGCTCTCTTAAAGAACACCTCCGGCTGACCAACGCCGCTCTGGAGGAGGAACAGCAGCACCAACTGAGACCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU445990 lncRNA downstream 16721 15099016 ~ 15101012 (-) True G376602
TU445961 lncRNA downstream 72374 15044712 ~ 15045359 (-) True G376574
TU445691 lncRNA downstream 82267 15035165 ~ 15035466 (-) True G376364
TU445642 lncRNA downstream 156681 14910767 ~ 14961052 (-) False akt3b
TU445468 lncRNA downstream 376184 14740261 ~ 14741549 (-) False b3gnt2a
TU446002 lncRNA upstream 2761 15132017 ~ 15132290 (-) True G376608
TU446008 lncRNA upstream 18529 15147785 ~ 15147985 (-) True G376613
TU446010 lncRNA upstream 23636 15152892 ~ 15153120 (-) True G376615
XR_004577285.1 lncRNA upstream 28890 15158146 ~ 15158646 (-) True LOC117596121
TU446071 lncRNA upstream 268412 15397668 ~ 15401270 (-) True G376671
XM_034300392.1 mRNA downstream 4440 15104177 ~ 15113293 (-) True dcaf15
XM_034300393.1 mRNA downstream 4577 15104177 ~ 15113156 (-) False dcaf15
XM_026932164.2 mRNA downstream 40117 15074671 ~ 15077616 (-) True rln3b
XM_026932137.2 mRNA downstream 45388 15060921 ~ 15072345 (-) True spast
XM_026932138.2 mRNA downstream 45389 15060921 ~ 15072344 (-) False spast
XM_026932052.2 mRNA upstream 6977 15136233 ~ 15142801 (-) True dla
XM_026932275.2 mRNA upstream 43482 15172738 ~ 15180828 (-) True ccsapa
XM_026931794.2 mRNA upstream 52377 15181633 ~ 15186072 (-) True acta1a
XM_026932290.2 mRNA upstream 62049 15191305 ~ 15208140 (-) True nup133
XM_034300172.1 mRNA upstream 107604 15236860 ~ 15243012 (-) False ndufaf5
TU445400 other downstream 405356 14697239 ~ 14712377 (-) False ifngr1
TU445430 other downstream 433405 14683102 ~ 14684328 (-) False G376143
XR_004577346.1 other downstream 842603 14274817 ~ 14275130 (-) False dand5
XR_003403798.1 other downstream 1078747 14038854 ~ 14038986 (-) True LOC113537776
XR_003403796.1 other downstream 1079135 14038528 ~ 14038598 (-) True LOC113537774
TU446065 other upstream 326523 15455779 ~ 15457027 (-) False dpy30
TU446066 other upstream 326523 15455779 ~ 15458205 (-) False dpy30
TU446067 other upstream 326523 15455779 ~ 15457083 (-) False dpy30
TU446479 other upstream 788372 15917628 ~ 15920553 (-) True G376956
TU446429 other upstream 804381 15933637 ~ 15942686 (-) False khsrp

Expression Profile