RNA id: TU446210


Basic Information

Item Value
RNA id TU446210
length 931
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G376786
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 15681161 ~ 15683090 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTCACTATCATGGGGATGCAGAAGGATCACCCACCAAAAGAAGCCAAAGCTGGATGTTCTGGTTGTATTTTCCAAGTTATATATGtggttttgacttttattttagtcatataactcataattatcatttttgttttacctatttttaatttgaaacaaaagTATATGTCATCATATCTCCCAGTCTTTATGGTTGTATgatgtgcatatttatatacttgtttgtttagtctCAAACACAGATGCTTTGCCCATGTCCCATAGAGCACCTGCTGTTTTATGTGCAATAAGCTGGCTATAAGgttcacaattttaaacatcacaatctaattgattcttttgatacGTGTtgtatacaccaatcagacATAACAACCAgtgaaaggtgaagtgaataacattgattatttctctaCGATGGCATTTGTTGAGGGTTGGGATATATTGGTATAACAGTCAGTTCTCTGtgttgatgtgttagaagcaggaaaaatgggcaagggaTGCTACATAAAGGTTCCTCTGAAAGTAACAGAAAGCAAGCTCAATTAgtctgtttttgctatacactgaagacgtttgggtttgaggtcaaaagatgaataggAGATGATggtttagaatttcagctttcatctcctgatttttatatctgtgttacacagcttaaaacatggcaccttttggtATAGGCACAAAttctcttaaagtaaattaaacaacacttaatatttggttcatATCCCTTACTTGCAATAACTGTATCAAGCCAGCATACATACATCCCATATACATCGCTCAAAACAAGAGTAGCTGTTCATAGCTACTAATTCTTTAAACTATCAATTTAACAGgatacacctgggcaacaagaaacaccagtcacatgttccaacatacttcatcacttgaaaataaaatgtttaaaaa

Function

GO:

id name namespace
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0042254 ribosome biogenesis biological_process

KEGG:

id description
ko05224 Breast cancer

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU446181 lncRNA downstream 1990 15674807 ~ 15679171 (-) True G376763
TU446167 lncRNA downstream 28140 15611622 ~ 15653021 (-) True G376758
TU446162 lncRNA downstream 131376 15548392 ~ 15549785 (-) True G376755
TU446070 lncRNA downstream 218539 15461134 ~ 15462622 (-) True G376670
TU446085 lncRNA downstream 227369 15412424 ~ 15453792 (-) False dpy30
TU446236 lncRNA upstream 33102 15716192 ~ 15716946 (-) True G376807
TU446293 lncRNA upstream 95157 15778247 ~ 15779702 (-) True G376840
TU446449 lncRNA upstream 129276 15812366 ~ 15822505 (-) True G376934
TU446486 lncRNA upstream 198883 15881973 ~ 15883423 (-) True G376961
TU446518 lncRNA upstream 264558 15947648 ~ 15948079 (-) True G376982
XM_034300377.1 mRNA downstream 46714 15553316 ~ 15634447 (-) False pkd1a
XM_034300376.1 mRNA downstream 46715 15550926 ~ 15634446 (-) False pkd1a
XM_034300375.1 mRNA downstream 46715 15550926 ~ 15634446 (-) True pkd1a
XM_026931717.2 mRNA downstream 179634 15497939 ~ 15501527 (-) False nthl1
XM_026931726.2 mRNA upstream 36548 15719638 ~ 15727747 (-) True tekt4
XM_026931911.2 mRNA upstream 103159 15786249 ~ 15789136 (-) True LOC113537443
XM_026931920.2 mRNA upstream 117132 15800222 ~ 15809810 (-) True LOC113537452
XM_026931915.2 mRNA upstream 126827 15809917 ~ 15813455 (-) True LOC113537446
XM_034300084.1 mRNA upstream 159415 15842505 ~ 15852123 (-) True exosc1
TU446066 other downstream 222956 15455779 ~ 15458205 (-) False dpy30
TU446067 other downstream 224078 15455779 ~ 15457083 (-) False dpy30
TU446065 other downstream 224134 15455779 ~ 15457027 (-) False dpy30
TU445400 other downstream 968784 14697239 ~ 14712377 (-) False ifngr1
TU445430 other downstream 996833 14683102 ~ 14684328 (-) False G376143
TU446479 other upstream 234538 15917628 ~ 15920553 (-) True G376956
TU446429 other upstream 250547 15933637 ~ 15942686 (-) False khsrp
TU446671 other upstream 469829 16152919 ~ 16155481 (-) False zgc:158803
TU446672 other upstream 472518 16155608 ~ 16164370 (-) False zgc:158803
XR_004577334.1 other upstream 742364 16425454 ~ 16475431 (-) False LOC113537389

Expression Profile