RNA id: XM_034300062.1


Basic Information

Item Value
RNA id XM_034300062.1
length 2367
RNA type mRNA
GC content 0.61
exon number 18
gene id khsrp
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 15929753 ~ 15942730 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACGCGAGCCAATAGAAACGCGCGCTCGGGTGCCGCGGCGCGACCGCgttgctttcttcttcttcttcttcttcttcgtcttcctTTCCTCGTTAACTTGGCTTTTTCTCGCCTTCCAGCTCCGGCGCGCGCCTTCCCCGGGcccttcttctttctctcttctctccctctctctcgcgcgcgctctctctgtctatctgtctatctctttctctctgcacgGATTGACACCGGAACGCACGAGGACAGTGATGTCGGAGTACAGCGCGGTGCCGCCGCCGCCTCCCGGGgccgcagcagcagcagcagcactgggAGCCGGTGGGATAAAGAAGGACGCGTTCGCGGACGCGGTGCAGCGCGCGCGgcagATTGCAGCTAAGATCGGTGGAGACGTCGCAGGCGGCCCTGTGAGCAAGAACGGAGGTACGGAGGGTTATCCTTTCTCAGCACAGAAACGATCGCTGGAGGAtggagATCAGCCGGACAGTAAGAGGATGGCTCCTCAGAGTGACAGGGACAACGCTACAGCGCTGTCTATCAGCGCTCAGCTGGCTGCTCTCTCTCAGCAGAGtGGACGTCCTTCTGCTATAACGGAGGAGTACAGAGTTCCTGACGGCATGGTTGGCCTCATCATTGGTCGAGGAGGAGAGCAGATCAATAAGATCCAGCAGGAGTCGGGATGTAAGGTTCAGATCGCGCCAGaCAGCGGAGGTTTACCCGATAGAAGCGTCTCTCTCACTGGGACTCACGACTCCATCCAGAAGGCTAAGATGCTGTTAGATGACATCGTGTCGCGGGGGCGGGGCACACCGCCCACCTCCTTCCACGAGGCCAATGGGAGCGGCCACATGCAGGAGATGATCATCCCGGCGGGAAAAGCCGGCCTCGTCATCGGCAAGGGCGGAGAAACCATCAAACAGCTCCAGgagcgtGCTGGTGTGAAGATGATTTTGATACAGGATCCATCTCAGGGACCGAACATAGACAAACCCCTCCGCATCATTGGAGATCCCTAcaaagtgcagCAAGCGAGGGAGATGGTGCAGGAGATTCTGCGTGAGAGAGATCAGTTTGGAGGAGACAGGAACGAATACGGCTCCCGgatgggaggaggaggaggaggaggaggtggaggtggaggtggaggtggaatagaggtgccTGTGCCGCGTCACTCCGTGGGCGTCGTGATTGGCCGAAACGGTGAGATGATCAAAAAGATTCAGAACGATGCAGGAGTCAGGATACAGTTCAAACCAGatgaCGGGAGTGGACCTGATAAGGTCGCTCACATCATGGGGCCTCCTGACCGCTGTGAGCACGCAGCCGGCATCATCAACGAGCTCCTACAGAGCATCCGCGTCCGAGAGGAGGGTGGAGGGggacCCCCTGGTCCTCCCGGGACAGGTATGCCTCCAGGTGGGCGTGGCAGGGGGCGTGGCCCAGGTAACTGGGGTCCCCCTGGTGGCGAGATGACCTTCTCTATCCCCGCCCACAAATGCGGCCTGGTGATTGGCCGAGGAGGCGAGAACGTGAAGTCGATCAACCAGCAGACAGGCGCGTTCGTGGAGATCTCGCGCCAGCCGCCGCCCAACGGAGACCCCAACTTCAAACTGTTCACCATCCGGGGGAATCCGCAGCAGATCGACCACGCCAAGCAGCTCATCGAGGACAAGATCGAGGGTCCCCTGTGTCCTGTAGGTCCCGGTCCTGGTGGTCCCGGTCCCGCCGGCCCAATGGGTCCTTACAACCCGAACCCATATCAGCCCGGACCTCCGGGAGCCCCACCACAtggaGGACCTCCAGGTGCCCAGTACCCCCCTCAGGGTTGGGGAAATGCCTACCAGCAGTGGCAGCCGCCTGCACCTCATGACCCCAGTAAAGCTGCAGCAGATCACAGTGCTGCCTGGGCAGCGTATTATGCGCAGTACTACCAGCAGCCTGGTGGAGGCGCTATGCCCGGCCAGACACCCAGCGCGCAGCCCGCTGCTCCCGCCCCCGCCGACCAGAGCCAAGCGGCCCAGAACACGGCACAGCCCGACTACACCAAGGCCTGGGAGGAGTACTACAAGAAAATGGctcaggCAGGTGGTGGTGGCGCTGCTCCAGCAGCAGGTGGAGCTCCAGCAGCGACAGGAGCAGCAGGACAGACTGACTACAGCGCCGCCTGGGCCGAGTACTACAGACAACAAGCGGCTTATTACGGCCAAAACCCACAGAACCCCGGACAGCCTGCAGCCACGCAGCAGGGCCAAcagACGCAGTAAActtggccacgcccacttcctcCCCAGTGACTTCCTCCCCTTTTGCTTTTTGTCCCCCCGCCTTCCTCcgtcctccttcctcctcctcctcctccgt

Function

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU446486 lncRNA downstream 46330 15881973 ~ 15883423 (-) True G376961
TU446449 lncRNA downstream 107248 15812366 ~ 15822505 (-) True G376934
TU446293 lncRNA downstream 150051 15778247 ~ 15779702 (-) True G376840
TU446236 lncRNA downstream 212807 15716192 ~ 15716946 (-) True G376807
TU446210 lncRNA downstream 246663 15681161 ~ 15683090 (-) True G376786
TU446518 lncRNA upstream 4919 15947648 ~ 15948079 (-) True G376982
TU446509 lncRNA upstream 21227 15963956 ~ 15970091 (-) False vps54
TU446680 lncRNA upstream 222969 16165698 ~ 16169196 (-) False G377087
TU446681 lncRNA upstream 222969 16165698 ~ 16169196 (-) True G377087
TU446675 lncRNA upstream 235881 16178610 ~ 16179122 (-) True G377084
XM_026931906.2 mRNA downstream 34758 15886599 ~ 15894995 (-) True avpi1
XM_034300075.1 mRNA downstream 60199 15859404 ~ 15869554 (-) True cdc25d
XM_026931863.2 mRNA upstream 3122 15945851 ~ 15955280 (-) True slc25a23a
XM_026931864.2 mRNA upstream 4498 15947227 ~ 15955280 (-) False slc25a23a
XM_034300052.1 mRNA upstream 21147 15963876 ~ 15984959 (-) True vps54
XM_026931851.2 mRNA upstream 44058 15986787 ~ 15999994 (-) False LOC113537394
XM_034300055.1 mRNA upstream 44058 15986787 ~ 15999994 (-) False LOC113537394
TU446479 other downstream 9200 15917628 ~ 15920553 (-) True G376956
TU446066 other downstream 471548 15455779 ~ 15458205 (-) False dpy30
TU446067 other downstream 472670 15455779 ~ 15457083 (-) False dpy30
TU446065 other downstream 472726 15455779 ~ 15457027 (-) False dpy30
TU445400 other downstream 1217376 14697239 ~ 14712377 (-) False ifngr1
TU446671 other upstream 210190 16152919 ~ 16155481 (-) False zgc:158803
TU446672 other upstream 212879 16155608 ~ 16164370 (-) False zgc:158803
XR_004577334.1 other upstream 482725 16425454 ~ 16475431 (-) False LOC113537389
TU447143 other upstream 902283 16845012 ~ 16851663 (-) True G377416
TU447144 other upstream 902283 16845012 ~ 16845602 (-) False G377416

Expression Profile