RNA id: TU446486


Basic Information

Item Value
RNA id TU446486
length 1410
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G376961
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 15881973 ~ 15883423 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTAAACTCCAGTCCAGAGCTTTTGATTTGTTGCCTCACTGTGTGATAACTGATTTGCATGAAATTAGAAAAGTCTAGCCAGTTTTGCACTCGGTAGCTCAGTGAGCCTCTTACTGATGAAATCTGCCTGAAAGACAATTGATCCTGAGGGTTTGTGTGTGTCGTGTCACCTTGAAGAGCTCGTACAGGTCCTCCTCCAGGTCCTTGATGAAGTTGGGGTCGGACAGTTTGGGCAGGACGAGCTCTCTGATCTCCTGAGAGAACGGCACCTTTGCCTGAGCCAGCCATGCCCAGTAGAACGGGTCTACAccgaacacacaacacagacaaaTCACTCAGTGATGCGCTGTAGCACTGAAGTGTGAGTGTTtctgctgtaactgtaaatttaatttaaacaaaaattccAAAAGTGAAACTGTGTGtcaaaaaattaattatcaaaaagctttaaaaactgGGTCCAATTATTGCGATAAGGATTTCAATCAGAACTCTTAGACTTCAGAAATATTATGTGTGTCCTGTAAAATAATGTGCAGGGATGTGTGGGATTAGTCAAAGTGGATGTATGTGAttagtcagtgtgtgattactcAGCGCGGAACAGTATGTGATTGGACAGTATGGATGTGTGGGTTTAGTTAGTGTGGATGTGTGTTAGGTCTGTGGGGTGTGTGATTTGTCAGCATGGATGTGTGTGATTAGTCACACACATCCATGCTGACAAATCATGTGATTTGATCATGAGCTCTGTGATTAGTCAGTGAGTAATTAGTCAGTGTGGATATGTGTTTGATCAGTGAGgtgtgtgattagtcagtgtggatgtgtgtgattagtcagtgtggatgtgtgtgattagtcagtgtggatgtgtgtgattAGTCAGTGGTGTGTGATGCATGTGGTGAATGCTGATTTGGTTTACAGGCTCTCCAGGAATCTGGGTGTTTAAGCGGAAACGCCAGGCCGTTATCAATGGCTGCTATTTTAATGATGGGGTCCTTCACCACCACCCAGTCATTGTCCtataggacacacacacacacacacatactgggttagggttagggtttaaaACTTACATCAATAGCATAAACAGGTAATTTAAAATGTCCGCAttaaacaggaaagaaaaatcTTCACCCTGTTCCCTGAGGTGTCCATGGGGCAGTCGTACTTTATGAGCCAGTTGTCGTTGCCGCGATCTGCAGGATTACAGACAACACATCCGTTACAGCACACAGGGTTTAGTACAACAATCACGTGCTCTTACTCGGCAACGATCTGTAATCAAGTCTgtgaaaatgaacacacacaaatctgatAATGTGTCTCATcattaataatatcattaaGAACAGTAATAATACACTACTAAGAagaaatcaattcaattcaatttgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU446449 lncRNA downstream 59468 15812366 ~ 15822505 (-) True G376934
TU446293 lncRNA downstream 102271 15778247 ~ 15779702 (-) True G376840
TU446236 lncRNA downstream 165027 15716192 ~ 15716946 (-) True G376807
TU446210 lncRNA downstream 198883 15681161 ~ 15683090 (-) True G376786
TU446181 lncRNA downstream 202802 15674807 ~ 15679171 (-) True G376763
TU446518 lncRNA upstream 64225 15947648 ~ 15948079 (-) True G376982
TU446509 lncRNA upstream 80533 15963956 ~ 15970091 (-) False vps54
TU446680 lncRNA upstream 282275 16165698 ~ 16169196 (-) False G377087
TU446681 lncRNA upstream 282275 16165698 ~ 16169196 (-) True G377087
TU446675 lncRNA upstream 295187 16178610 ~ 16179122 (-) True G377084
XM_034300075.1 mRNA downstream 12419 15859404 ~ 15869554 (-) True cdc25d
XM_034300077.1 mRNA downstream 12880 15859404 ~ 15869093 (-) False cdc25d
XM_034300076.1 mRNA downstream 13134 15859404 ~ 15868839 (-) False cdc25d
XM_034300078.1 mRNA downstream 13135 15859404 ~ 15868838 (-) False cdc25d
XM_026931897.2 mRNA downstream 23656 15853218 ~ 15858317 (-) True pgam1b
XM_026931906.2 mRNA upstream 3176 15886599 ~ 15894995 (-) True avpi1
XM_034300061.1 mRNA upstream 46330 15929753 ~ 15942730 (-) True khsrp
XM_034300062.1 mRNA upstream 46330 15929753 ~ 15942729 (-) False khsrp
XM_026931863.2 mRNA upstream 62428 15945851 ~ 15955280 (-) True slc25a23a
XM_026931864.2 mRNA upstream 63804 15947227 ~ 15955280 (-) False slc25a23a
TU446066 other downstream 423768 15455779 ~ 15458205 (-) False dpy30
TU446067 other downstream 424890 15455779 ~ 15457083 (-) False dpy30
TU446065 other downstream 424946 15455779 ~ 15457027 (-) False dpy30
TU445400 other downstream 1169596 14697239 ~ 14712377 (-) False ifngr1
TU445430 other downstream 1197645 14683102 ~ 14684328 (-) False G376143
TU446479 other upstream 34205 15917628 ~ 15920553 (-) True G376956
TU446429 other upstream 50214 15933637 ~ 15942686 (-) False khsrp
TU446671 other upstream 269496 16152919 ~ 16155481 (-) False zgc:158803
TU446672 other upstream 272185 16155608 ~ 16164370 (-) False zgc:158803
XR_004577334.1 other upstream 542031 16425454 ~ 16475431 (-) False LOC113537389

Expression Profile