RNA id: TU446671


Basic Information

Item Value
RNA id TU446671
length 1668
RNA type TUCP
GC content 0.47
exon number 4
gene id zgc:158803
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 16152919 ~ 16164370 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggagagggagagagagagggacagagagcgCAGGAGGTCCAGATCTCGCAGTGGGGACAGATACAGGGATGGTGGAAGCTCGTCGTCTCATCGCTCGCGGCGACATCGCTCGTCCCACTCTAGAGACCGGGACCGGGAGAGGAAGCACAGACATAAAGACCGCCATCGCTCTCGCTCCCACTCTcacaggaggaagaagaagagGTCGTCGCACACCCGAGAGCGGGAGCGCTCCCTGTCGCAGGAGCGATGGAGAGAGTACGGAGGAGAGGACAGGTGGAGGGAAGACAGCCGGAGAGACACGGAGCGAGAGccgggcgagagagagaggtcgATCTCGTCCCCGGAGATGGGCAGACTGAGGGGCAGAGAGAGATCCGTCTCCGTGGAGAGAGAGAACCGCTCCAGCTCAGAGGAGAGGGAGTCAGGAGAGATATAAacagatcgagagagagagagaagaatgatGTCGGTTGCTATGCTTTCACATGACTTCCTGTCCGTgttctttatttctgtgtgttaGCTGATCTGTCGGTGGCTGGATGGGCTTGGCAGAGATGCACAGTGTCTCATCATAAATCTGAATTTTAGCACAATTAGGCCTTATTTACTACGACACAGACATGCTGTGTATCTGATATTCTTTTGACGactaaatattaaaagaaaaatctcatCCTCAACTGCATATCCTTCCTTTGGGCTGTACTTTCTTAAGGattcagcctcttttttttttttttctttaaatttcatttaaacagaaaatagtTAAACAACATATTTTCAACATATTTCTTTCAAGGTCTTGTTCTCGAAGTCCAATCCAATGAAATTTTGTCACCATGCGATCACAGGTCATTAGCTGGTCTGAACTGCAGCCCTGAAGACCAGCAGCGTGAAGCCCCACAGTTAGATAACGTGTAACTAAGCTGACGTCTATCACGttgaaaaagttatttttttacttgaaccaacatgatttattttcactaaTAAACATTCATGTAATTTTCATGTCAGCTACCTCAACAACACTTTCTCCAGCTGACTGGCTTAGCCACCTTTAGCTAGCTCACTAACTCGCCAAATTGTAGTTAAAAGATCGTTCCGTAATGTAAAACTGTAATCGTGACGGGTTACAGCGGACttcttataaaatatttaagttGCCTACTGCGTCCATGAAATTTTACACAAGAAAATAGATTATCTTTGAGAAAGCTGAGGCTTTGTCCAGCGTGGGGTTCGGTCTTCAGGGCTGCAGCTAGATGTCGTTTATCCTGTTATCGTCCTGTTATCCACCGGGATTGCACCGAGCCGGATCTCTGCGTAACGTTTTACCCATCCGCCAAGCTATAAATCAGTGGCAGCAGGTTGAAGAATAGAGGGACTCTACTTAAAGGTTGTGTGCGCTTGTTTGCTTTTGAGATTCAGTAAAAATGATGGGTGCCTAAATAACATTTGCGAATAGATTCCGCCAGATTCACCCATCCCCGAACCCTGCGTGTTAGACGTTTGGCGATTCTCGTGCTCTAACATACCCGTTTCATCCACATTCATTAGGCGTAGATGTGAAAAGGGGAAGATGTACAGGACCAGAGATTGTTCACTCATGTTATGCATTCAGATACGGAGGGAGCGACCTGCAATCTGCCAGCCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU446509 lncRNA downstream 182828 15963956 ~ 15970091 (-) False vps54
TU446518 lncRNA downstream 204840 15947648 ~ 15948079 (-) True G376982
TU446486 lncRNA downstream 269496 15881973 ~ 15883423 (-) True G376961
TU446449 lncRNA downstream 330414 15812366 ~ 15822505 (-) True G376934
TU446293 lncRNA downstream 373217 15778247 ~ 15779702 (-) True G376840
TU446680 lncRNA upstream 10217 16165698 ~ 16169196 (-) False G377087
TU446681 lncRNA upstream 10217 16165698 ~ 16169196 (-) True G377087
TU446675 lncRNA upstream 23129 16178610 ~ 16179122 (-) True G377084
TU446676 lncRNA upstream 23181 16178662 ~ 16179122 (-) False G377084
TU446673 lncRNA upstream 61323 16216804 ~ 16221607 (-) False si:ch211-286b5.5
XM_026931907.2 mRNA downstream 2061 16146129 ~ 16150858 (-) True pane1
XM_026931904.2 mRNA downstream 25965 16118388 ~ 16126954 (-) True rab1aa
XM_034300083.1 mRNA downstream 41047 16106095 ~ 16111872 (-) True sertad2a
XM_026931873.2 mRNA downstream 83333 16056944 ~ 16069586 (-) True peli1a
XM_034300063.1 mRNA downstream 101732 16045728 ~ 16051187 (-) True LOC117596132
XM_034300082.1 mRNA upstream 15342 16170823 ~ 16178495 (-) True mri1
XM_034300050.1 mRNA upstream 23831 16179312 ~ 16200267 (-) False cc2d1a
XM_034300051.1 mRNA upstream 23831 16179312 ~ 16200267 (-) True cc2d1a
XM_026931905.2 mRNA upstream 52084 16207565 ~ 16208561 (-) True nanos3
XM_026931870.2 mRNA upstream 53774 16209255 ~ 16216035 (-) True si:ch211-286b5.4
TU446429 other downstream 210233 15933637 ~ 15942686 (-) False khsrp
TU446479 other downstream 232366 15917628 ~ 15920553 (-) True G376956
TU446066 other downstream 694714 15455779 ~ 15458205 (-) False dpy30
TU446067 other downstream 695836 15455779 ~ 15457083 (-) False dpy30
TU446065 other downstream 695892 15455779 ~ 15457027 (-) False dpy30
TU446672 other upstream 127 16155608 ~ 16164370 (-) False zgc:158803
XR_004577334.1 other upstream 269973 16425454 ~ 16475431 (-) False LOC113537389
TU447143 other upstream 689531 16845012 ~ 16851663 (-) True G377416
TU447144 other upstream 689531 16845012 ~ 16845602 (-) False G377416
TU447682 other upstream 1027251 17182732 ~ 17194992 (-) False LOC113525650

Expression Profile