RNA id: TU446681


Basic Information

Item Value
RNA id TU446681
length 3451
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G377087
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 16165698 ~ 16169196 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agttctgtgcaaaagtcttagtcacatgcaaagaaatgctgtagagcaaagacaccttcaaaaataatgaaattaaatgtttctacattaaaaaaatactataaagagcagtaaacagtaataaatgaaacaaagtcagtatttaatgtgacgatccttcgctttaaaataaaccagtatctcaggtgcagtgtgtgcagttttataaggaaatgatctgtaagtgttactgagcatcttgcgccaagacttttgcacagtactgtatatatcatggccatgttttgttttattaattcgtTCCCTTGTTTTAGGTAAATGTGTTCGAGTTAACGAATTAATAAAACACGCTTATGTGTTAATAAGTCGtggaatatatatgtatatatatatttttcccgCATGTCATGTGCGAGGCTCTGTACGTTTTCCTaatatggcttttttttatttttaattctcacTGAAATGCCTGAACTGTCCTTTAACGCTAACCCAGTTCTTTGAGATCGTTAAATCTTATATAAATGGGTAGATAGCTAGTGGTAGTCGTAGCTGGAGTGAGTAAACGGTGCTATGGAGCTAGACGTTACACTATACCTCACTAGATTACCCAGAATCCTCTGTTCCTACTGCTtataattgcttttttttttttttttcccctcagtgaaGTGCAGGACTATGTGATGTCTCACCATAAacgcatgcacatacacacgtaGGAGGAAACTCGCAATCCAGCCAGGGCCTTTACTCCTTATACAGGATGTGAATGAAGCTAATGTTGTAGATCGCTAGCATGTAGCCATTAAGTCATGTGTCAGGTCAGAGTGATGGTGAAAACAAGACGAATCAATTAGGAATGTcgacattttcctcagatgtgttgataaattactaagaaaagctTCTTATGGCTAATATTAGTGCGTAATTTCCTAATTTTAGCCTCAATCGCTAACCGAACTCTCACTCGTTCCACcatattggggaaaaaaagagtaaCAGTGCATCACAAATTGTGTAAATTGGATCAGAAAAATTCTTCTGAAGTACTAAATAGTACAATAGCGAATAAACACAGCAAACGCTTAACCACATTTAAAAGCAGCACATATGATGAGGTGATTAGcatgaatgaaatatttaacGATGCTAACAGAAGGTTGAAGCTAATTTTGCCTTTTAAATGTTGTCATGCTAGCTAGCAACATTAGCTTTTTTCATTCTTAGGCCCCCAAGCCAGCGATGAATGTCTTAACGGTTAGCAGGTGCATGATGATAATCGGTAGCGTTGGTGTTTTGGGCGTACGAGCTCAGTAAAAGCCGATCCTGATTGTGTCTCCGTGTTGCTGAATGTAGCAGAGCCAGTTCTCTTCACTGCCACCAGCACAAGTGTTTGAGCACGTCCCGGTACCATTGCCATTACCcgttaccatagcaacaaggAGATCAATGTCTTaaggaaaagacaaaaaaaaaaaataaaaatgatgaaaggattgaaatgattttttttgccataaaaTAAACTGGAAGTTCAGATAGGCTGTgaattattgtgtttttttttccttctttatcTCAAAATGTTgccattatttaatttttcttatgATTTGCTTTGGGCACTTTTTATGGCGGTTAAGTGAAAGTTTTCTAGGAATGTTTTTGGATGGTTTGCACTACATCGCATTATTATCCACTTTATCAATATTATCAAGCAATAATTTAAAAGttgtcccatttttttttttcccttatgtATGACAAGCTAACGATGTAGTTAACTAGCTAGTCGTTAAAAGTCATTTATCTGGACAATGTGAAGGAGGAGTGATGGTGAAAACAAGACAAATCAGTtgggaatatcaacattttcctcggATAACTTGATGAATTGTTAAGTTAAAGCTCCATTTAGCTGAATTTATAGGttctgccatttaaaaaaaaaggtcaacatGTCTTTTCTTTTAGAGAATAGAGGAAAAACGAATGGATGGCTTGTCTGGAAAGGAAATGTAGCATGATGTAATGAATTAGTcaaaacatctgtgtgtgtgtgtgtgtgtaagtcagTCGTATCATCGCTTGCATCATCAGAATACATCTGGATTAAGTTTCCCAGTGTTCAAATCCGAGAATGTGATCCTTGAGCTGACATTTCTACAGTACGTtgtggttttattgtttttagaAAACAATATGTCTGTattaggtttcttttttttttttactttgtatagaaaaatatacacaaaactGTAGCAAATATGTGATCATCCAGGAGTTCACTAGATTTCATTGACTCAAAAGGTACAAGGTTTGTATATTTCACGTTCACTATTGTTTAgctgattttaatgttatatatacgGTATACACACACCAAGTTGCCAGGTTCTGGGTTCTCGTGTACCTTGTAGCTACACGtattgtccatgttttttttcagataaaccTTACAGGTCACTTTGTAGGTGTAAAACTACTGACTGTATTCAGGAGCAGACCTGATAAACTGGCAATTCAGTGTGTAAATATAATCTGTATGCTGTATATCTATGACTTGTGGTTGTTGGTGATGAAATTTGTTTAAAGGCTGTAATGGGAAGgccttcttcacacacacacagcacgtcTTCATACACCAAATAGCACGTCTTGGACATCCACGTGAGCCATGTGCCAATAATCAGCTACACGATATTTTATGATATATTCGTCACTCATTGTGTTGTCAAGTTCCTGAAGTCAGGCTCGAGGCTTTGAGGCaatttgtcttttaaaaattaaaaatgaatttaatctTATACCAgtcctgttgttttttttttctagtagagaaaaatcacatataATCATTTATCGGTCTCTGTCAAGGAAATCTGAGCTGGAATTAAAACAAGGATATGATAAAGTCATAGCGATTGTAGCGTGGTCCTTCATAAGTAAGTGATGCCAATCGACTCCATGCTCcaaaccaatcagagcacagctTGCTGCTTTTTTGACCAATGGGAAGCGTGCTTTGGTGAACGACTGCGTGAGTTTGAAAAGACCTCCCCATATATGATATTTATTCTCATTTATTATAACCGATCATCACAGCTAGGTTCTGTTTTGTATAATGtgggaaaaaagagggaaaaaaagcatttgatttgattttttatacatatatatatatacatatatatatatatatatatatatatatgaatataatactgtatacagctTACATATACTACAAAACGTCTCTTTCACATCAATACAATAAAGAAGCAATGCATTTCTGGAGTCATTTATTTGCtggtcagtgattttttttctttttttatttgttattattgattattttgcaCACAGTGTCAGGCTTGTCATCAACACTGGCTTGTAGAATATAACAGTACTGCATTTAATCCATCGTGGTTGATATTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU446509 lncRNA downstream 195607 15963956 ~ 15970091 (-) False vps54
TU446518 lncRNA downstream 217619 15947648 ~ 15948079 (-) True G376982
TU446486 lncRNA downstream 282275 15881973 ~ 15883423 (-) True G376961
TU446449 lncRNA downstream 343193 15812366 ~ 15822505 (-) True G376934
TU446293 lncRNA downstream 385996 15778247 ~ 15779702 (-) True G376840
TU446675 lncRNA upstream 9414 16178610 ~ 16179122 (-) True G377084
TU446676 lncRNA upstream 9466 16178662 ~ 16179122 (-) False G377084
TU446673 lncRNA upstream 47608 16216804 ~ 16221607 (-) False si:ch211-286b5.5
TU446750 lncRNA upstream 94707 16263903 ~ 16265647 (-) True G377125
TU446815 lncRNA upstream 180181 16349377 ~ 16350060 (-) True G377171
XM_034300071.1 mRNA downstream 1338 16153821 ~ 16164360 (-) True zgc:158803
XM_026931907.2 mRNA downstream 14840 16146129 ~ 16150858 (-) True pane1
XM_026931904.2 mRNA downstream 38744 16118388 ~ 16126954 (-) True rab1aa
XM_034300083.1 mRNA downstream 53826 16106095 ~ 16111872 (-) True sertad2a
XM_026931873.2 mRNA downstream 96112 16056944 ~ 16069586 (-) True peli1a
XM_034300082.1 mRNA upstream 1627 16170823 ~ 16178495 (-) True mri1
XM_034300050.1 mRNA upstream 10116 16179312 ~ 16200267 (-) False cc2d1a
XM_034300051.1 mRNA upstream 10116 16179312 ~ 16200267 (-) True cc2d1a
XM_026931905.2 mRNA upstream 38369 16207565 ~ 16208561 (-) True nanos3
XM_026931870.2 mRNA upstream 40059 16209255 ~ 16216035 (-) True si:ch211-286b5.4
TU446672 other downstream 1328 16155608 ~ 16164370 (-) False zgc:158803
TU446671 other downstream 10217 16152919 ~ 16155481 (-) False zgc:158803
TU446429 other downstream 223012 15933637 ~ 15942686 (-) False khsrp
TU446479 other downstream 245145 15917628 ~ 15920553 (-) True G376956
TU446067 other downstream 708615 15455779 ~ 15457083 (-) False dpy30
XR_004577334.1 other upstream 256258 16425454 ~ 16475431 (-) False LOC113537389
TU447143 other upstream 675816 16845012 ~ 16851663 (-) True G377416
TU447144 other upstream 675816 16845012 ~ 16845602 (-) False G377416
TU447682 other upstream 1013536 17182732 ~ 17194992 (-) False LOC113525650
TU447735 other upstream 1097033 17266229 ~ 17268030 (-) True G377862

Expression Profile