RNA id: XM_034300089.1


Basic Information

Item Value
RNA id XM_034300089.1
length 4471
RNA type mRNA
GC content 0.45
exon number 22
gene id si:dkey-76b14.2
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 16566253 ~ 16583137 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTGCGATAGAGGAAGTCCTCTCCTGATTTCCTCTCAGCGTGCCTGCTCAAATGCTGCTGTCTGTAAAAGAGAGATTcatgaatacacacatttacacacagttgGTAAATCTGATGTGCATGACACTGACTTGAAAATGTGTTGAGGGAGGGCCTTGACatgcaaatgtgtgtttataaacagAGTTTTAGAAAGATTTATATTAAgcaaaatgcacacacatacacacacacacacatattcataacTCAATTTTGATGTGTAAATAAGTCATAAAACAATTCTGAATGAGGAAGAATGGAGAAAAGGCTGGAGACGTAAAGAGAAGGAAACAACAGCAGCCGTCATATACAACACAAGCATCACATGCAAGATTCTCGGCACAGATCAGGAAGTGATTCTGTGAGCCTGTTTTCTTATCCGtttgattatgtgtgtgttggcatgcgtgtgtgtgtgtgtgtctgagaggcTACTCTCTCTAGTTCTATAATGGTACCTTCATCACAGAAACTCCACTAATCACATATGGACTCCATCTTGAAGCTACAACATGGGATCCAGACTAAAGGAAAATCCAGAAAGGACGTTTTACTGGTTCTTTCAAGCCTCATGCCCCATCGCCAGAGACAAGGATCCTGGGCTGCTGTTTCATTTCCCAGAGGACTTCAGTGATGAGGAGTGTTTGCAATCCCTTCCTCGATTCTGCTTCCCATATGATATAGAGAGGGTGAGGGATGGCATAGCTGTGCAGCACTTTACATTTGCATTGACTGACCTCGAGGGATGTCAGCGATTTGGGTTCTGCAGACTCACTTCCAGCTCCCAGACCTGCCTCTGCATCCTCAGCTACCTGCCTTGGTTCGAAGTCttttataaactgttaaataatCTGGCAGACTATGTGACAAAAGGCCAGACGAGTGAGATGAGAGAGTTACTGGCAACTCTTTACAAACACCCCGTGCCGCTGGCCAACAGCTTAAACCCTCTGCAGCTGatgccGTACTTCATCGCTCCTGATCCAAAGGCTTTACCGTCCATTccagagagtagGAACCTGACAGAGCTGATCGTGGCTGTAGATGTGGGGAACCTCCTGCAGCTGTACGCCAGCATGCTTTTTGAGAGACGTATCCTCATTTGCTGCAGTAAACTCAGCACGCTGACCGCGTGTGTACATGCATGTAGCAGCATGCTCTTCCCCATGTACTGGCAGCACATCTTCATTCCGGTCCTACCACCACACCTGCTGGACTACTGctgCGCTCCAATGCCGTACCTTATTGGAGTTCATTCCAGCCTGATAGAGAGAGTGAGGAGTCGTGCTCTGGATGATGTGGTCATTCTGAACGTGGACACAAACACTATGGAGTCTCCTCACGATGACCTGAAGAAGCTCCCAACAGATGTGgtgacaGCTCTGAAAGTGAGGCTGAAGCGCCAGGCTGGATTTACAGGCCCCGGTGTAGCTAAAGCATTTCTCAGAGCTCAGGCTCTGCTGTTTGGAGCATACAAAGATGCTTTACAGTACCCTAGTGGACAACCCGTGTCATTCAGTGAGGAgttgtttctcacacacagatcTCCCAGCATGAGGCAGTTCCTTGAAAGTGCCATTCACCTGCAGTTTTTCAAAcagTTTATTGATGGGCGTCTAGAGATGCTCAACCAAGGAAAAGAGCCAGACGACCTGTTTGAGGAGGAAATACAGCAGTGTGGCGCGTCCTCAGGTGGCTCAAAATCTTACCAGCAGTGGATGGGGAACCTGAAGAAAGGAGGAGGATCTCTCATTCTGACAGTCAAGTCCAAAGCGCAGATGTACAAAAACGTCACATGTCACAGCAAGCTGAAGAATCTTATTTCACCAAAGGAGCAGAAACAGGTTCACACACTCCAGCGAGGAGGGTCTGTGTGCGGGACACACTCGTATCGCTTCAGCAAATCAGAATGCCTTCAGAACAGATTACCGATCACACAGCATTTCGGAAAGTCCCGTCCTCGCAGGCCCACACGCAATGCATCCGTCCAGCAGGGGGAGGAAACACCACAAGACAACAGTGGCAACTGGGGagaggagagTCATGTAGAGCTGGCTTCCGATGACCTGACAGAGGAGGAAGAGCTCTCCATGATGGCTGACCTTGAGGAGATGGACCTGCTAGGGGAGATCTTCGACACCTTAAACACTCAGAGCTCCAGAGAGCCGGGCCTGCTGTACAGCACACGCAGCCTCGATGTCTTCACCTCTGACTGCACCGACTTCATCAACAGAAGGAGCTTGGCCACACCCAGTCAGGAGAGCTTGAGTCTTTCCACTGGGAACAATGGCAGTCTGATGAGCTGGGAGGAAGGGCTTGAAGAAGGGCCAGATAAAGAGGAAGAGGAGTCTGATCTGCCAAGTGATGAACCAGAGAGGGACATGAAAGATGGAGTAAGAGAGGGTCACAATATGTCAGGGGAGGAGGAGCCAGGTGTGGATCTTGGAAGGTTAGTGGAGGATCTCGTGGATCTAAGGCAGGAACTTGAAGAGGAGCTGAAAGAAAACTGTAAGAAAACTAGCAGATCATCCAGAGAAAATCAGGAGGAAACTAGCAGATTATCCAGAGAAGATCAGGAGGAAACTAGCAGATCATCCAGAGAAGATCAGGAAGAAACTAGCAACTCATCCAGAGAAGATCAGGAGGAAACTAGCAGATCATCCAGAGAAAATCAGCAGGAAACTAGCAGCTCACCAGGAGAAAGTCAGGAAAGAACTGGGCGATCCATaccagatgatgatgataatggggAAAGTAGTGGAGCTCAGGAGCAGCAAGTAAAAGAgacaataaacaaaacacacaatgcaGGGCACCAAGATCTAACTCAGGAGGACAACAACCCAGGGAGTCTACCTAGAAATTCTCCCCACGAAAAGGAGCTCCTTGCTGAGGAACAACTGAATGCAGATACATTGGTTAATGCAGTCAAAAAAGATGAGGAACAAGAAGAGTGCAGAGACCAGTCAACTCCTAAAGTGCTCTCCAAAGTGGCCCTGTTCCAGGTCAAGGCCTACCAGACAAAGGCTCACCCGAGACTGTAAGGCCCAGCTATGGCCACAAAATCTTAGATACATCTCCAAAGATCTCTCCAAGAGGTCCTGGAGGCGTTTGGGTGACCGTGAATACAAAAACGGATGACTCGACCATAAAATCCCCAACCACGTCCAATGTATCAGACACAGCCACAGAGGACGAAGACTTGCCACCACCTAAAGTGTCTGAACTTAAAAAGAGATTTGAGCAGTGATTGACTGGAGGGATAATGTCATGCCCATGCTAATGCTAGATGCCAGAGATGCCCACCTTTACTTGGAGGGACCACAGGGatgtaaaatgaacaaaaacaaaatcagatATCTAGTTGGCTCAAGCACATCATACTATTAATGTGTAACCTATTAAAGTGTGGTCAATGCAGTACTCACTCCACCAGCGCACAACGATCCTGCTGTTCAAACCAGTTTGCAAAACTGAACATTCaaagcacatttattttgtccgtttttaaaacattttctttcaaaataaattttatagaCTTTgaagctgttatttttttccccagacagtATATTTACACGCATTGATGATATGGTTCACCTGAGGGAAAACAAAAAGTTTCTGAAATTGtctaatgaaataaatcaaggAGTGCATCAGTTCTGGAAATCTGGAAAGCAGAGGTTAAAGTAGCACAAATCTTTACTTAATTAAGAGAGCCATtgctcttttaaaataaataagtaaaatttaCATACACCACCACATTCTTCACCTAGTTATGGTAGAAAACTTAAAAACTCAAAAATGTACTTAATATataatgaaagtaaaagtagaaGAAacttcacaaaagaaaaagacatttgCCCCATTTTCAAATCAATCATacactgattttagttactCAAGGAAAATTATTGGCACTTTCACCAAGAAACCAAGGAACATGGGAAAATATTTGCTAAGTCTAACAAAATGAAGTCTTACTaaaatttggtcttggccatgTACCAGTTAAGGCTCCTCATCATACAACTGCTCCCTACCAGGGAGGGTGGAGGCtatcacgtgcttcctctgagccacctgcatcttttcaaactgctgctcatgctgcatccaAAAGCAACATTTGAATGAAGATTTTCAGAAAAGGTACAACGCAATAATGCAACAAACCAAATCAGCGCAAATGATTCCTCGGACGAATCCTGTGGTGCGTGTGGTGCGACATTCTTTGGTTCCCCATGCACAACttcagttcctacctgcaattagctCATATGTACAGTTTGACAtgcaaaaatgtatgaaaaaccTGTAACcctggtttcatcttatcctttCATATACAACCTctaattaaatgtgtgtaaacgTGTGTACATtatggagaaaaataaagctcagaAGGAATTCAGAA

Function

GO: NA

KEGG:

id description
K20160 DENND1; DENN domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU446915 lncRNA downstream 78122 16487790 ~ 16488131 (-) True G377244
TU446851 lncRNA downstream 175450 16389094 ~ 16390803 (-) True G377191
TU446816 lncRNA downstream 215794 16350249 ~ 16350459 (-) True G377172
TU446815 lncRNA downstream 216193 16349377 ~ 16350060 (-) True G377171
TU446750 lncRNA downstream 300606 16263903 ~ 16265647 (-) True G377125
XR_004577292.1 lncRNA upstream 15776 16598913 ~ 16600222 (-) True LOC113547464
TU447074 lncRNA upstream 23193 16606330 ~ 16607547 (-) True G377359
TU447084 lncRNA upstream 38030 16621167 ~ 16741989 (-) False slc25a10
TU447085 lncRNA upstream 61959 16645096 ~ 16686484 (-) False slc25a10
TU447151 lncRNA upstream 273642 16856779 ~ 16858709 (-) True G377422
XM_034300088.1 mRNA downstream 7093 16533834 ~ 16559160 (-) True LOC117595682
XM_034300087.1 mRNA downstream 40847 16497785 ~ 16525406 (-) True LOC113537390
XM_034300234.1 mRNA downstream 90822 16421261 ~ 16475431 (-) True LOC113537389
XM_034299953.1 mRNA downstream 148246 16413949 ~ 16418007 (-) True asf1bb
XM_026931886.2 mRNA downstream 154522 16398919 ~ 16411731 (-) True prkacab
XM_026931872.2 mRNA upstream 242 16583379 ~ 16589630 (-) True zgc:65894
XM_026931861.2 mRNA upstream 47487 16630624 ~ 16663097 (-) False gcgrb
XM_026931862.2 mRNA upstream 47487 16630624 ~ 16663097 (-) False gcgrb
XM_026931860.2 mRNA upstream 47487 16630624 ~ 16663097 (-) True gcgrb
XM_034300235.1 mRNA upstream 97356 16680493 ~ 16695687 (-) True slc25a10
XR_004577334.1 other downstream 90822 16425454 ~ 16475431 (-) False LOC113537389
TU446672 other downstream 401883 16155608 ~ 16164370 (-) False zgc:158803
TU446671 other downstream 410772 16152919 ~ 16155481 (-) False zgc:158803
TU446429 other downstream 623567 15933637 ~ 15942686 (-) False khsrp
TU446479 other downstream 645700 15917628 ~ 15920553 (-) True G376956
TU447143 other upstream 261875 16845012 ~ 16851663 (-) True G377416
TU447144 other upstream 261875 16845012 ~ 16845602 (-) False G377416
TU447682 other upstream 599595 17182732 ~ 17194992 (-) False LOC113525650
TU447735 other upstream 683092 17266229 ~ 17268030 (-) True G377862
TU447860 other upstream 1124863 17708000 ~ 17712592 (-) False ubl5

Expression Profile