RNA id: TU447084


Basic Information

Item Value
RNA id TU447084
length 2420
lncRNA type read_through
GC content 0.38
exon number 4
gene id slc25a10
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 16621167 ~ 16741989 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacacagacacacacagacccacacccacacacacacaccccttaaaTAAAAGGGCATTATGTATATGcacaaaaatatgaacaaacacactggaacaaacaaatacacactcttGTGTTCTGAAGCAtgaaaaaaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatcactgtACATTTCCAGTACATTTCCACTCTCAGCCATcagggcgtgtcccaaaccacactttGTAGACTACACAATGCACTACATCACACAGAAGCTAATGATTAGCATTTGACATGTTTacatcctcacacacagacGTACACACCGACGTGGTGCAGTAAGTGTGCCCTTTCTGTCTGTGTACAATTACTAGCCCATCTGTTATGCttcacaaagtattggcaccccccTGCACTGTCCTTCGatggaaagggaccaccatTGAGCAGATATTACATGGCTTGAAGAATCTGCACTATTTTGTAAATTTGACTTGCTTTCTAACATCACTATAACCTCTTACTTTACCACggtaaaaaaaacagcatcaaaAGATTTGCTTTGGCTGGTATGAGGTTCAAgtgtaatcattttaaatgaattttacgAGGTTCAAACTCCTTCGAATcagttttccatttttccaaaGCTACGCCATCTCATCCTATTATTaccagaattttaaaaaaaaactttattttatctACATTCCTCTTTATTTAACAGCTAAAGGAGGTTAAAAGCATCTTTTGAGCCCCACGTGGTTTTCCATTCAGttgaattgatttatttttgtcaaatttTCCTCATGTTCCTTCACGTGAGCATTGATTTTCTATGTACATGTGTGATTTCAGCAACAAGCCACATTCGTATTTCAAATTAGGTCTGATGCTGTGAACAAGCAGTAAACCCAAACGATCTTTTTGAAGACCAATCATGTGGCTtgtgtggtccgacgtttcttcagttccccactcgtTCACATTTTCTGTCGTGTATAGAGAcgttatatataattattatatataaatactacTCTGactactttgtttatatttcatgAAGTAGAACCGATaaagtttgttagaaaatattgaaaattttttaaaaacaatctcTCTCAGCCCCGCAGTTGGGATTAAAAAAGATTCTGCACCACCTCTACCCTACAGCTATTTCATTTGTTCAGGAAATGTCCATATTattctaataattattataagcAGTGCTGAGCCTGATACACTCACAGATCCTGTGATCGTCCCTTTATACTGATGGATGGGGTatatggggtgccaatactttacgCAGATGGACTAGAGTCAGTAATTACAGACCTACAGAATGATCAGCAGCTGAATGTTGAGACTTCATGTTGCTGTTCTATAATGAAACTCCACATGTTATTGAGATGCTGAGTCAGAGTGGAGGCCAGTTTTATTTGATTAGCTCCAGGCCAGTAACAAAAACAAGTGAATTATTAATTCAAATTCATAACGACAGCCAATTTCTTAATCACATCTGTTTAATAATTTCTTTCCACTGCCTCATATATCGAGTACTTGAGACAAAACACACCCTCATTGTCCTAGCTCTATAGAAGAGCGAATTTACTAGaattgcacctttaatgggtTTGATCAGGAGAGTTAGTGAGAGAGTttatttgatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggggtaatCTGTATGGCGTGGAAAGTCAGGACCAATCTGTACTGGAGAAAAGAGTTCACTTTAGAAAAAACTCTGCTTTAGTGTATAAGGAGAATAATGCTGTATATCGTATATGCGAAAACCGAACAATGTGATTTCTAATGAAACTGTTCCAGCCATGTTGGGTTCACAGCTGGAGGACTTCGTGCTGGAGGTTTATCTGATAAGATTGTAGATCATTTAGTGTATTAACCTAGTGTATTAAATGAGATTTATTATCTTAATTCTGTTAATAGTAAGACTAAAGATGTatggaaaatattattttttaatttgtttctttAAAGGAATAggttattggggaaaaaaaatggattatgTCCAGTATTCGCTTTTGTTAATGTGGATAATCAGTAAAGGAGGTACGTCTCAGACGAATCCCTAAAGCCCTCACTTGagaataaatgattttaaaggaAGTCTTCAATGGAAGGAAACACTACCATCACttcttagctacattagcttgaTATCTCCAGTGAAAAACTAAAGATATCCAACATGGCTTTTCACCAACAACTTCCTCGCAGTTGAGAGAAGGTTGATGCTAATCTGTGGCCTGTGGAGGGcgctgtgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgagtgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU447074 lncRNA downstream 13620 16606330 ~ 16607547 (-) True G377359
XR_004577292.1 lncRNA downstream 20945 16598913 ~ 16600222 (-) True LOC113547464
TU447063 lncRNA downstream 39925 16579242 ~ 16581242 (-) False si:dkey-76b14.2
TU446915 lncRNA downstream 133036 16487790 ~ 16488131 (-) True G377244
TU446851 lncRNA downstream 230364 16389094 ~ 16390803 (-) True G377191
TU447151 lncRNA upstream 114790 16856779 ~ 16858709 (-) True G377422
TU447172 lncRNA upstream 253409 16995398 ~ 16995649 (-) True G377441
TU447211 lncRNA upstream 290914 17032903 ~ 17052265 (-) True G377474
XR_004577336.1 lncRNA upstream 326547 17068536 ~ 17078161 (-) True LOC117596165
TU447707 lncRNA upstream 499846 17241835 ~ 17253715 (-) True G377847
XM_026931872.2 mRNA downstream 31537 16583379 ~ 16589630 (-) True zgc:65894
XM_034300089.1 mRNA downstream 38030 16566253 ~ 16583137 (-) True si:dkey-76b14.2
XM_034300088.1 mRNA downstream 62007 16533834 ~ 16559160 (-) True LOC117595682
XM_034300087.1 mRNA downstream 95761 16497785 ~ 16525406 (-) True LOC113537390
XM_034300234.1 mRNA downstream 145736 16421261 ~ 16475431 (-) True LOC113537389
XM_026931856.2 mRNA upstream 46132 16788121 ~ 16793721 (-) True LOC113537398
XM_026931903.2 mRNA upstream 123239 16865228 ~ 16872437 (-) True LOC113537435
XM_034299897.1 mRNA upstream 146775 16888764 ~ 16898002 (-) True LOC117596109
XM_034299898.1 mRNA upstream 173424 16915413 ~ 16916826 (-) True LOC117596110
XM_034299899.1 mRNA upstream 174864 16916853 ~ 16920580 (-) True LOC117596111
XR_004577334.1 other downstream 145736 16425454 ~ 16475431 (-) False LOC113537389
TU446672 other downstream 456797 16155608 ~ 16164370 (-) False zgc:158803
TU446671 other downstream 465686 16152919 ~ 16155481 (-) False zgc:158803
TU446429 other downstream 678481 15933637 ~ 15942686 (-) False khsrp
TU446479 other downstream 700614 15917628 ~ 15920553 (-) True G376956
TU447143 other upstream 103023 16845012 ~ 16851663 (-) True G377416
TU447144 other upstream 103023 16845012 ~ 16845602 (-) False G377416
TU447682 other upstream 440743 17182732 ~ 17194992 (-) False LOC113525650
TU447735 other upstream 524240 17266229 ~ 17268030 (-) True G377862
TU447860 other upstream 966011 17708000 ~ 17712592 (-) False ubl5

Expression Profile