RNA id: XM_034300235.1


Basic Information

Item Value
RNA id XM_034300235.1
length 3480
RNA type mRNA
GC content 0.43
exon number 11
gene id slc25a10
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 16621167 ~ 16741989 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGACGGAGAAGCGGGTCTCGCGCTGGTACTTCGGCGGCATCGCCTCGTGCGGAGCGGCGTGTTGCACGCACCCGCTGGACCTGGTCAAGgTGCACCTGCAGACGCAGCAGGAggtgaagatgaggatgatgggGATGGCGATGCACGTGGTGAAGCACGACGGCGTTCTGGCGCTCTACAATGGCCTCAGCGCCTCCCTCTGCAGACAGatGTCTTACTCTCTGACCAGGTTTGCTATCTATGAGACAGTGAGGGACATGATGGGCAGTCAGGGGCCCATGCCCTTCTACCAGAAAGTCCTGCTGGGGGCATTcggagGATTTACAGGAGGTTTCATTGGGACACCAGCAGACATGGTTAAcgtcagGATGCAGAACGACATGAAGCTTCCTGCCGAGCTCAGGAGAAActATAAGCATGCTCTGGATGGACTGTACAGGGTGTGGTGTGAGGAGGGAACGAGGAAGCTGTTCTCGGGAGCCACCATGGCGAGCAGCAGAGGAGCGCTGGTCACTGTAGGACAGTTAGCGTGCTATGATCAGGCGAAGCAGCTCGTGTTGGCGACGGGATTCCTGGGAGACAACATTCTCACTCACTTCCTGTCCAGCTTCATCGCTggAGGATGTGCTACGTTTCTGTGTCAGCCGCTGGATGTATTGAAGACACGATTGATGAATGCTAAAGGAGAGTACAGGggagTACTGCACTGTCTGTCTGAGACTGCCAAACTGGGACCACTCGCCTTCtacaagGGTTTAGTTCCAGCAGGGATCCGATTGGTTCCTCACACGGTTCTGACCTTCCTGTTTCTGGAGCAGCTGAGGAAGTACTTCGGCATCAGGGTGGTCAGCTGAGCCCAAGCCGTGACCTCTGCCCTTTTGGCCACTCCCACTGCCACAGTGTTGATCCTGGACTGAGCTGGAACTAGGACGTGCCCTCTAATGCGTGCATgcgtgcacaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacccttaaaTAAAAGGGCATTATGTATATGcacaaaaatatgaacaaacacactggaacaaacaaatacacactcttGTGTTCTGAAGCAtgaaaaaaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatcactgtACATTTCCAGTACATTTCCACTCTCAGCCATcagggcgtgtcccaaaccacactttGTAGACTACACAATGCACTACATCACACAGAAGCTAATGATTAGCATTTGACATGTTTacatcctcacacacagacGTACACACCGACGTGGTGCAGTAAGTGTGCCCTTTCTGTCTGTGTACAATTACTAGCCCATCTGTTATGCttcacaaagtattggcaccccccTGCACTGTCCTTCGatggaaagggaccaccatTGAGCAGATATTACATGGCTTGAAGAATCTGCACTATTTTGTAAATTTGACTTGCTTTCTAACATCACTATAACCTCTTACTTTACCACggtaaaaaaaacagcatcaaaAGATTTGCTTTGGCTGGTATGAGGTTCAAgtgtaatcattttaaatgaattttacgAGGTTCAAACTCCTTCGAATcagttttccatttttccaaaGCTACGCCATCTCATCCTATTATTaccagaattttaaaaaaaaactttattttatctACATTCCTCTTTATTTAACAGCTAAAGGAGGTTAAAAGCATCTTTTGAGCCCCACGTGGTTTTCCATTCAGttgaattgatttatttttgtcaaatttTCCTCATGTTCCTTCACGTGAGCATTGATTTTCTATGTACATGTGTGATTTCAGCAACAAGCCACATTCGTATTTCAAATTAGGTCTGATGCTGTGAACAAGCAGTAAACCCAAACGATCTTTTTGAAGACCAATCATGTGGCTtgtgtggtccgacgtttcttcagttccccactcgtTCACATTTTCTGTCGTGTATAGAGAcgttatatataattattatatataaatactacTCTGactactttgtttatatttcatgAAGTAGAACCGATaaagtttgttagaaaatattgaaaattttttaaaaacaatctcTCTCAGCCCCGCAGTTGGGATTAAAAAAGATTCTGCACCACCTCTACCCTACAGCTATTTCATTTGTTCAGGAAATGTCCATATTattctaataattattataagcAGTGCTGAGCCTGATACACTCACAGATCCTGTGATCGTCCCTTTATACTGATGGATGGGGTatatggggtgccaatactttacgCAGATGGACTAGAGTCAGTAATTACAGACCTACAGAATGATCAGCAGCTGAATGTTGAGACTTCATGTTGCTGTTCTATAATGAAACTCCACATGTTATTGAGATGCTGAGTCAGAGTGGAGGCCAGTTTTATTTGATTAGCTCCAGGCCAGTAACAAAAACAAGTGAATTATTAATTCAAATTCATAACGACAGCCAATTTCTTAATCACATCTGTTTAATAATTTCTTTCCACTGCCTCATATATCGAGTACTTGAGACAAAACACACCCTCATTGTCCTAGCTCTATAGAAGAGCGAATTTACTAGaattgcacctttaatgggtTTGATCAGGAGAGTTAGTGAGAGAGTttatttgatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggggtaatCTGTATGGCGTGGAAAGTCAGGACCAATCTGTACTGGAGAAAAGAGTTCACTTTAGAAAAAACTCTGCTTTAGTGTATAAGGAGAATAATGCTGTATATCGTATATGCGAAAACCGAACAATGTGATTTCTAATGAAACTGTTCCAGCCATGTTGGGTTCACAGCTGGAGGACTTCGTGCTGGAGGTTTATCTGATAAGATTGTAGATCATTTAGTGTATTAACCTAGTGTATTAAATGAGATTTATTATCTTAATTCTGTTAATAGTAAGACTAAAGATGTatggaaaatattattttttaatttgtttctttAAAGGAATAggttattggggaaaaaaaatggattatgTCCAGTATTCGCTTTTGTTAATGTGGATAATCAGTAAAGGAGGTACGTCTCAGACGAATCCCTAAAGCCCTCACTTGagaataaatgattttaaaggaAGTCTTCAATGGAAGGAAACACTACCATCACttcttagctacattagcttgaTATCTCCAGTGAAAAACTAAAGATATCCAACATGGCTTTTCACCAACAACTTCCTCGCAGTTGAGAGAAGGTTGATGCTAATCTGTGGCCTGTGGAGGGcgctgtgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagcgagtgggAAGGTCCAGACTGCTGGAGTTTCGGCTGTGTGTCGCTCTGTTTTGTCCAGAATGAATAAAGATTTTTGGaaattaaagattaatattttcAGCCTG

Function

GO:

id name namespace
GO:0006839 mitochondrial transport biological_process
GO:0031966 mitochondrial membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K13577 SLC25A10, DIC; solute carrier family 25 (mitochondrial dicarboxylate transporter), member 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU447074 lncRNA downstream 72946 16606330 ~ 16607547 (-) True G377359
XR_004577292.1 lncRNA downstream 80271 16598913 ~ 16600222 (-) True LOC113547464
TU447063 lncRNA downstream 99251 16579242 ~ 16581242 (-) False si:dkey-76b14.2
TU446915 lncRNA downstream 192362 16487790 ~ 16488131 (-) True G377244
TU446851 lncRNA downstream 289690 16389094 ~ 16390803 (-) True G377191
TU447151 lncRNA upstream 161092 16856779 ~ 16858709 (-) True G377422
TU447172 lncRNA upstream 299711 16995398 ~ 16995649 (-) True G377441
TU447211 lncRNA upstream 337216 17032903 ~ 17052265 (-) True G377474
XR_004577336.1 lncRNA upstream 372849 17068536 ~ 17078161 (-) True LOC117596165
TU447707 lncRNA upstream 546148 17241835 ~ 17253715 (-) True G377847
XM_026931861.2 mRNA downstream 17396 16630624 ~ 16663097 (-) False gcgrb
XM_026931862.2 mRNA downstream 17396 16630624 ~ 16663097 (-) False gcgrb
XM_026931860.2 mRNA downstream 17396 16630624 ~ 16663097 (-) True gcgrb
XM_026931872.2 mRNA downstream 90863 16583379 ~ 16589630 (-) True zgc:65894
XM_034300089.1 mRNA downstream 97356 16566253 ~ 16583137 (-) True si:dkey-76b14.2
XM_034299945.1 mRNA upstream 4410 16700097 ~ 16701130 (-) True LOC113537431
XM_026931887.2 mRNA upstream 43805 16739492 ~ 16742838 (-) True si:dkey-27j5.5
XM_026931856.2 mRNA upstream 92434 16788121 ~ 16793721 (-) True LOC113537398
XM_026931903.2 mRNA upstream 169541 16865228 ~ 16872437 (-) True LOC113537435
XM_034299897.1 mRNA upstream 193077 16888764 ~ 16898002 (-) True LOC117596109
XR_004577334.1 other downstream 205062 16425454 ~ 16475431 (-) False LOC113537389
TU446672 other downstream 516123 16155608 ~ 16164370 (-) False zgc:158803
TU446671 other downstream 525012 16152919 ~ 16155481 (-) False zgc:158803
TU446429 other downstream 737807 15933637 ~ 15942686 (-) False khsrp
TU446479 other downstream 759940 15917628 ~ 15920553 (-) True G376956
TU447143 other upstream 149325 16845012 ~ 16851663 (-) True G377416
TU447144 other upstream 149325 16845012 ~ 16845602 (-) False G377416
TU447682 other upstream 487045 17182732 ~ 17194992 (-) False LOC113525650
TU447735 other upstream 570542 17266229 ~ 17268030 (-) True G377862
TU447860 other upstream 1012313 17708000 ~ 17712592 (-) False ubl5

Expression Profile