RNA id: TU447520


Basic Information

Item Value
RNA id TU447520
length 290
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G377709
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 17885038 ~ 17887303 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGATTTATGTAcgctggatttatgcacactggatttatgcacaCTGGATTTATGCACGTtggatttatgtacactggatttatgtacactggatttatgtggatttatgcacactggatttatgcacactggatttatgcacactggatttatgtacactggatttatgcacattggatttatgcacattggatttatgcacactggatttatgtatgttggatttatgtacactggatttatgcacactgggtTTATGCACATtggatttatgtacactggatttatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU447503 lncRNA upstream 69932 17814531 ~ 17815106 (+) True G377703
XR_004577311.1 lncRNA upstream 182295 17701668 ~ 17702743 (+) True LOC117596150
TU447439 lncRNA upstream 285104 17595088 ~ 17599934 (+) True G377652
TU447431 lncRNA upstream 299995 17574761 ~ 17585043 (+) True G377644
TU447429 lncRNA upstream 315571 17569060 ~ 17569467 (+) False LOC113526395
TU447530 lncRNA downstream 50964 17938267 ~ 17942279 (+) True G377715
TU447552 lncRNA downstream 69943 17957246 ~ 17957480 (+) True G377723
TU447558 lncRNA downstream 79915 17967218 ~ 17968950 (+) True G377727
TU447565 lncRNA downstream 96183 17983486 ~ 17987975 (+) False LOC113524903
TU447569 lncRNA downstream 120380 18007683 ~ 18008164 (+) True G377738
XM_026911275.2 mRNA upstream 2865 17879085 ~ 17882173 (+) True LOC113524898
XM_026911300.2 mRNA upstream 16000 17849467 ~ 17869038 (+) True LOC113524912
XM_026911299.2 mRNA upstream 16000 17859419 ~ 17869038 (+) False LOC113524912
XM_034300122.1 mRNA upstream 71741 17809632 ~ 17813297 (+) True LOC117596141
XM_034300120.1 mRNA upstream 79517 17801617 ~ 17805521 (+) True LOC117596140
XM_026911276.2 mRNA downstream 2794 17890097 ~ 17893856 (+) True LOC113524900
XM_034300127.1 mRNA downstream 11540 17898843 ~ 17904082 (+) True LOC113524915
XM_026911284.2 mRNA downstream 25086 17912389 ~ 17916263 (+) True LOC113524906
XM_034300110.1 mRNA downstream 31755 17919058 ~ 17942334 (+) True LOC113524905
XM_034299910.1 mRNA downstream 54242 17941545 ~ 17952178 (+) True soul5l
XR_004577315.1 other upstream 1030022 16822550 ~ 16855016 (+) False b3gntl1
TU446960 other upstream 1320522 16561383 ~ 16564516 (+) True G377269
TU446758 other upstream 1540414 16340768 ~ 16344624 (+) False G377132
XR_004577301.1 other upstream 1568653 16290730 ~ 16316385 (+) False LOC113537689
TU447578 other downstream 168321 18055624 ~ 18056805 (+) True G377747
TU447579 other downstream 175115 18062418 ~ 18068946 (+) True G377748
TU447580 other downstream 175115 18062418 ~ 18068946 (+) False G377748
TU447581 other downstream 175115 18062418 ~ 18068946 (+) False G377748
trnak-uuu_20 other downstream 232362 18119665 ~ 18119737 (+) True trnak-uuu_20

Expression Profile