RNA id: TU447552


Basic Information

Item Value
RNA id TU447552
length 235
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G377723
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 17957246 ~ 17957480 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GacaaacctgcacacacacacacacatatgtacctTAAAGTAGAAGCTGACCCCTGCTCTGCTCTCCGTCTCCGTGTGGTCACTCATGGAGTCGGAGGAGAAGATGTCGAGCTGTTCCTGatctgtctctccctcctcctgCCTCTGAGAGGCGCTGACGAGCACGTCACTGAGAAATGAGCACTCGGAGGGCGCTCCAGAGCTACTGCCGCCGCAGGTGCTCACAGCACACTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU447530 lncRNA upstream 14967 17938267 ~ 17942279 (+) True G377715
TU447520 lncRNA upstream 69943 17885038 ~ 17887303 (+) True G377709
TU447503 lncRNA upstream 142140 17814531 ~ 17815106 (+) True G377703
XR_004577311.1 lncRNA upstream 254503 17701668 ~ 17702743 (+) True LOC117596150
TU447439 lncRNA upstream 357312 17595088 ~ 17599934 (+) True G377652
TU447558 lncRNA downstream 9738 17967218 ~ 17968950 (+) True G377727
TU447565 lncRNA downstream 26006 17983486 ~ 17987975 (+) False LOC113524903
TU447569 lncRNA downstream 50203 18007683 ~ 18008164 (+) True G377738
TU447570 lncRNA downstream 51467 18008947 ~ 18009156 (+) True G377739
TU447573 lncRNA downstream 52406 18009886 ~ 18048292 (+) True G377742
XM_034299910.1 mRNA upstream 5068 17941545 ~ 17952178 (+) True soul5l
XM_034300110.1 mRNA upstream 14912 17919058 ~ 17942334 (+) True LOC113524905
XM_026911284.2 mRNA upstream 40983 17912389 ~ 17916263 (+) True LOC113524906
XM_034300127.1 mRNA upstream 53164 17898843 ~ 17904082 (+) True LOC113524915
XM_026911276.2 mRNA upstream 63390 17890097 ~ 17893856 (+) True LOC113524900
XM_034299911.1 mRNA downstream 30329 17987809 ~ 18005140 (+) True LOC113524903
XM_034300366.1 mRNA downstream 200613 18158093 ~ 18165060 (+) True rdh8b
XM_034300357.1 mRNA downstream 215150 18172630 ~ 18175771 (+) True LOC113524897
XM_034300354.1 mRNA downstream 336278 18293758 ~ 18309052 (+) True parn
XM_034300358.1 mRNA downstream 411564 18369044 ~ 18375405 (+) False LOC113524838
XR_004577315.1 other upstream 1102230 16822550 ~ 16855016 (+) False b3gntl1
TU446960 other upstream 1392730 16561383 ~ 16564516 (+) True G377269
TU446758 other upstream 1612622 16340768 ~ 16344624 (+) False G377132
XR_004577301.1 other upstream 1640861 16290730 ~ 16316385 (+) False LOC113537689
TU447578 other downstream 98144 18055624 ~ 18056805 (+) True G377747
TU447579 other downstream 104938 18062418 ~ 18068946 (+) True G377748
TU447580 other downstream 104938 18062418 ~ 18068946 (+) False G377748
TU447581 other downstream 104938 18062418 ~ 18068946 (+) False G377748
trnak-uuu_20 other downstream 162185 18119665 ~ 18119737 (+) True trnak-uuu_20

Expression Profile